Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0162.Seq
         (768 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    22   6.2  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    22   6.2  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    22   6.2  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   8.2  

>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 125 ICGWNKANATN 157
           +C W  AN+TN
Sbjct: 211 LCNWGSANSTN 221


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 125 ICGWNKANATN 157
           +C W  AN+TN
Sbjct: 371 LCNWGSANSTN 381


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 125 ICGWNKANATN 157
           +C W  AN+TN
Sbjct: 371 LCNWGSANSTN 381


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 378 SCFLSIISLLQITIA*FPDRWICKLYE 458
           SC+ +I S      A  P RW+ KL++
Sbjct: 247 SCYATIDSQWLAHWAFAPIRWVAKLWD 273


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,616
Number of Sequences: 336
Number of extensions: 2894
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)