Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0162.Seq
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 58 2e-09
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 47 3e-06
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 44 2e-05
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 43 4e-05
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 40 4e-04
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 37 0.003
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 33 0.045
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 30 0.42
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 27 2.2
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 26 5.2
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 26 6.8
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch... 25 9.0
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 25 9.0
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 25 9.0
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 25 9.0
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 57.6 bits (133), Expect = 2e-09
Identities = 25/63 (39%), Positives = 39/63 (61%)
Frame = +2
Query: 323 SLLEDVLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQSREEFL 502
++LE + M++ P PF+ PV+ + V DYY ++ PMDL T+ LR Y+S EEF+
Sbjct: 350 AVLEMLFTEMQNHPSSWPFMQPVSKEDVPDYYEVIEHPMDLSTMEFRLRNNQYESVEEFI 409
Query: 503 ADS 511
D+
Sbjct: 410 RDA 412
Score = 28.7 bits (61), Expect = 0.97
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 688 FIFENLLTTKLKIMPESWPFLKPVNR 765
F +L T+++ P SWPF++PV++
Sbjct: 349 FAVLEMLFTEMQNHPSSWPFMQPVSK 374
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 46.8 bits (106), Expect = 3e-06
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +2
Query: 377 FLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
FL V+ + DYY ++ PMDL TI NL+ HY S++EF+ D
Sbjct: 324 FLTKVSKRDAPDYYTVIKEPMDLGTILRNLKNLHYNSKKEFVHD 367
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 44.4 bits (100), Expect = 2e-05
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +2
Query: 278 RPAERRRTDPLVTLSSLLEDVLNHMRHLPDVQPFLFPVNHKLVA--DYYRIVSRPMDLQT 451
+P R+ + S+L+++L +H PF PVN DY++++ PMDL T
Sbjct: 384 KPHRRKDAAEMKFCQSVLKELLKK-QHEAYAYPFYKPVNPTACGCPDYFKVIKHPMDLGT 442
Query: 452 IRDNLRQKHYQSREEFLADSI 514
+++ L Y S + F AD +
Sbjct: 443 MQNKLNHNEYASMKAFEADMV 463
Score = 32.3 bits (70), Expect = 0.078
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 338 VLNHMRHLPDVQPFLFPVN--HKLVADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
+L +R D PF PV+ + + DY I+ P+DL T++ Y S + F+ D
Sbjct: 241 MLRQLRRGRDSIPFRAPVDPVKQNIPDYPTIIKNPIDLGTMQKKFSSGVYSSAQHFIDD 299
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 43.2 bits (97), Expect = 4e-05
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +2
Query: 377 FLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
FL+P N KL DYY I+ RP+ L I+ N++ Y E +AD
Sbjct: 1544 FLYPPNRKLYPDYYIIIKRPIALGKIKRNIKNDRYGDVGELIAD 1587
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 39.9 bits (89), Expect = 4e-04
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +2
Query: 278 RPAERRRTDPLVTLSSLLEDVLNHMRHLPDVQPFLFPVNHKLV--ADYYRIVSRPMDLQT 451
+P R+ + S++L+++ ++ PF PV+ DY+ ++ PMDL T
Sbjct: 247 KPRRRKNNSQMRFCSTVLKELYKR-QYESFAFPFYQPVDPVACDCPDYFDVIKEPMDLST 305
Query: 452 IRDNLRQKHYQSREEFLAD 508
I+ L + Y + EEF +D
Sbjct: 306 IQSKLNKNEYSTLEEFESD 324
Score = 36.3 bits (80), Expect = 0.005
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 338 VLNHMRHLPDVQPFLFPVN--HKLVADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
++ ++ + PF PV+ + + DY IV PMDL TI L Y +EF+ D
Sbjct: 96 IVRQLKRTKNSAPFKVPVDPIKQNIPDYPTIVKNPMDLGTIEKKLTSYEYSVPQEFIDD 154
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = +2
Query: 374 PFLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLADSIRSSRTARFIM--- 544
PF PVN K DY +V +P DL+T+++ +++ + +E + +R +
Sbjct: 209 PFSHPVNRKEAPDYDSLVYKPQDLRTLKNMIKEGNITEVDELYREVLRIFANCKMYNGSD 268
Query: 545 VQQAVSLWPPRECY 586
A+S+W EC+
Sbjct: 269 PANAMSIWGD-ECF 281
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 33.1 bits (72), Expect = 0.045
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +2
Query: 305 PLVTLSSLLEDVLNHMRHLPD------VQPFLFPVNHKLVADYYRIVSRPMDLQTIRDNL 466
PL +L + + ++ +R D PF + ++ +YY+ + +PM L+ I+ L
Sbjct: 207 PLSSLEARAKVIMRQVRRYRDGSGRQLFAPFERLPDPRMFPEYYQAIEQPMALEVIQKKL 266
Query: 467 RQKHYQSREEFLAD 508
+ Y++ E+F+ D
Sbjct: 267 SKHRYETIEQFVDD 280
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 29.9 bits (64), Expect = 0.42
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 3 GHMRTNKACPLYTGSVTGGPAS 68
GHM+TNK CPL+ G GG A+
Sbjct: 954 GHMKTNKICPLF-GRPEGGLAT 974
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 685 SFIFENLLTTKLKIMPESWPFLKPVN 762
+F E TT K++PE+W F+ PV+
Sbjct: 536 AFFAELKTTTVRKLLPEAWGFMCPVH 561
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 410 DYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
DYY+I+ +P+ + +R+ + Y S +F D
Sbjct: 48 DYYQIIQKPICYKMMRNKAKTGKYLSMGDFYDD 80
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 25.8 bits (54), Expect = 6.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 400 ACCRLLSHSFPTD 438
ACC L++HS P D
Sbjct: 921 ACCNLITHSLPAD 933
>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
Rga5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +2
Query: 329 LEDVLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQSR 490
+ D N R ++ P H + +YY PM + + DN R + Y+ R
Sbjct: 122 VHDAANVFRRFINLMP-----EHVIPLEYYERFREPMTIPNLTDNERVEMYRRR 170
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 269 LVRRPAERRRTDPLVTLSSLLEDVLNHMRHL 361
L+RR + DP +LS+L +D+ NH++HL
Sbjct: 1334 LLRRQYQLLSADPN-SLSNLDQDLPNHLQHL 1363
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 365 DVQPFLFPVNHKLVADYYRIV--SRPMDLQTIRDNLRQKHYQSREEFLADSIRSSRTAR 535
DV + +N K + D +V +RP+ Q I+D + K+ E + S+ ++ +A+
Sbjct: 101 DVDKAIETLNGKTLDDREIVVQKARPVQEQPIKDRKKSKNKNGEEPETSTSVENAESAK 159
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 386 PVNHKLVADYYRIV 427
P NH+LV DYY+I+
Sbjct: 212 PGNHELVVDYYQIL 225
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,033
Number of Sequences: 5004
Number of extensions: 47629
Number of successful extensions: 142
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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