Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0162.Seq
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785... 64 9e-11
10_08_0006 - 14035990-14036135,14036246-14036339,14036845-140371... 45 6e-05
03_01_0219 + 1731267-1731728,1732148-1732235,1732330-1732417,173... 43 2e-04
02_04_0513 - 23569212-23569675,23569759-23569801,23569888-235700... 40 0.002
09_06_0192 - 21450158-21450276,21451084-21451573,21451750-214518... 40 0.002
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 40 0.003
01_01_0802 + 6246267-6247541,6247625-6247682,6247806-6248129,624... 40 0.003
07_03_0538 + 19231318-19231382,19231652-19232390,19232468-192325... 39 0.004
01_06_0069 - 26169818-26169904,26170186-26170893 38 0.007
04_04_1201 - 31697707-31697765,31697863-31698013,31698100-31699260 38 0.012
04_04_1198 - 31679584-31679642,31679740-31679854,31680701-316807... 38 0.012
08_01_0619 + 5412058-5413224,5413357-5413476,5413755-5413831,541... 37 0.020
08_01_0186 - 1561695-1561958,1562041-1562183,1562260-1562326,156... 37 0.020
02_02_0277 + 8489717-8491468,8491571-8491610,8491719-8491841,849... 36 0.047
08_01_0068 + 471729-472460,472578-472655,473270-473507,474130-47... 34 0.11
06_02_0325 + 14428065-14428799,14428916-14428993,14429607-144298... 34 0.11
06_01_0273 + 2022479-2022592,2022830-2022973,2023524-2023601,202... 33 0.25
02_03_0101 + 15233783-15234601 30 1.8
04_04_0202 - 23573425-23573949,23574285-23574593 29 4.1
02_04_0102 + 19743276-19743420,19743500-19743966 29 5.4
01_02_0059 - 10701859-10701963,10702034-10702153,10702534-107026... 28 7.1
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075... 28 9.4
03_02_0895 + 12230683-12230844,12230937-12230991,12231106-122311... 28 9.4
>06_03_0924 - 25976629-25976979,25977471-25978424,25978512-25978565,
25979135-25979254,25979357-25979532,25979624-25980107,
25980541-25980744,25981671-25981877,25982179-25982271,
25982433-25982621,25983364-25983423,25983591-25983927,
25984195-25984432,25984614-25984816,25985549-25986554,
25987125-25987290,25987715-25987824,25987944-25988195,
25988360-25988402,25988488-25988550,25989512-25989624,
25990787-25990838
Length = 1824
Score = 64.5 bits (150), Expect = 9e-11
Identities = 33/76 (43%), Positives = 48/76 (63%)
Frame = +2
Query: 281 PAERRRTDPLVTLSSLLEDVLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRD 460
PA+R R V LS++LE +++H+R + F PV K DY+ I+ RPMDL TIRD
Sbjct: 1700 PAKRHRGGE-VELSNILEKIVDHLRTMSCSFLFRKPVTKKEAPDYFDIIERPMDLGTIRD 1758
Query: 461 NLRQKHYQSREEFLAD 508
+R+ Y++RE+F D
Sbjct: 1759 KVRKMEYKNREDFRHD 1774
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +3
Query: 3 GHMRTNKACPLY 38
GHMRTNK CP Y
Sbjct: 1392 GHMRTNKLCPKY 1403
>10_08_0006 -
14035990-14036135,14036246-14036339,14036845-14037176,
14038040-14038094,14038682-14038750,14038940-14039039,
14039212-14039255,14039705-14039873,14040262-14040333,
14040439-14040519,14040586-14040650,14040796-14041260
Length = 563
Score = 45.2 bits (102), Expect = 6e-05
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +2
Query: 347 HMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRDNLR-QKHYQSREEFLADSIRSS 523
+M PD PF PV+ + V DYY I+ P+DL+T+ + +++Y + E F+AD R
Sbjct: 485 NMNEHPDAWPFKEPVDSRDVPDYYDIIKDPIDLKTMSKRVESEQYYVTLEMFVADMKRMF 544
Query: 524 RTAR 535
A+
Sbjct: 545 SNAK 548
>03_01_0219 +
1731267-1731728,1732148-1732235,1732330-1732417,
1732528-1732573,1732687-1732785,1734363-1734431,
1735706-1736036,1736123-1736256,1736400-1737251
Length = 722
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = +2
Query: 326 LLEDVLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLA 505
LL +L+ ++ F PV+H+ + DY+ I+ PMD TIR+ L Y + E+F
Sbjct: 203 LLLFILDRLQKKDTYGVFSEPVDHEELPDYHEIIEHPMDFSTIREKLLNDSYTTLEQFEN 262
Query: 506 D 508
D
Sbjct: 263 D 263
>02_04_0513 -
23569212-23569675,23569759-23569801,23569888-23570000,
23570099-23570158,23570472-23570541,23570887-23570951,
23571548-23571685,23571764-23573015
Length = 734
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +2
Query: 404 VADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
+ DY++I+ +PMDL TIR+ L Y S EF AD
Sbjct: 192 IPDYFQIIKKPMDLGTIRNKLDSGSYTSPSEFAAD 226
>09_06_0192 -
21450158-21450276,21451084-21451573,21451750-21451862,
21451992-21452376,21452461-21452529,21453165-21453264,
21454465-21454637,21454737-21454782,21454879-21454954,
21455160-21455196,21455799-21456041
Length = 616
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +2
Query: 281 PAERRRTDPLVTLSSLLEDVLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRD 460
P++ T PL LL VL+ ++ F PV+ + + DY+ I+ PMD TIR
Sbjct: 95 PSDSGPTTPLPD-KKLLVFVLDRLQKKDTYGVFSDPVDPEELPDYHDIIKHPMDFSTIRK 153
Query: 461 NLRQKHYQSREEF 499
L + Y + E+F
Sbjct: 154 KLNKGAYGNLEQF 166
>07_03_0562 +
19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/68 (30%), Positives = 37/68 (54%)
Frame = +2
Query: 296 RTDPLVTLSSLLEDVLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQK 475
RT PL +L + +L+ ++ F PV+ + + DY+ ++ PMD T+R L +
Sbjct: 3 RTTPLPDRKAL-DMILDKLQKKDTYGVFAEPVDPEELPDYHDVIEHPMDFGTVRRKLARN 61
Query: 476 HYQSREEF 499
Y+S E+F
Sbjct: 62 AYRSFEQF 69
>01_01_0802 +
6246267-6247541,6247625-6247682,6247806-6248129,
6248321-6248355
Length = 563
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 410 DYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
DY+ I+++PMDL T++ L HY+S EF D
Sbjct: 175 DYHTIITKPMDLGTVKSRLAAGHYKSPREFAGD 207
>07_03_0538 +
19231318-19231382,19231652-19232390,19232468-19232516,
19232600-19232664,19232774-19232828,19234107-19234225,
19234346-19234412,19235316-19235437,19235521-19235790
Length = 516
Score = 39.1 bits (87), Expect = 0.004
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +2
Query: 278 RPAERRRTDPLVTLSSL-LEDVLNHMRHLPDVQPFLFPVNHKL--VADYYRIVSRPMDLQ 448
+P + + DP+ T S +L + F PV+ + + DY+ ++ PMDL
Sbjct: 99 QPTSKNKVDPMNTSKSRQCGSILKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLG 158
Query: 449 TIRDNLRQKHYQSREEFLAD 508
T++ L K Y + EF AD
Sbjct: 159 TVKRKLTSKQYSNPYEFAAD 178
>01_06_0069 - 26169818-26169904,26170186-26170893
Length = 264
Score = 38.3 bits (85), Expect = 0.007
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +2
Query: 302 DPLVTLSSLLEDVLNHMRHLPDVQPFLFPVNHKLV--ADYYRIVSRPMDLQTIRDNLRQK 475
D L+ LL+ +L H D F PV+ + + DYY +S PMDL T+R L ++
Sbjct: 51 DALLRCGKLLDKLLEH----EDGWVFAEPVDARALRLVDYYLRISDPMDLGTVRRRLERR 106
Query: 476 HYQSREEFLAD 508
Y F AD
Sbjct: 107 RYADPWAFAAD 117
>04_04_1201 - 31697707-31697765,31697863-31698013,31698100-31699260
Length = 456
Score = 37.5 bits (83), Expect = 0.012
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 410 DYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
DY+ ++ PMDL T+R NL Y S ++F AD
Sbjct: 153 DYHAVIKCPMDLGTVRANLAAGRYPSHDDFAAD 185
>04_04_1198 -
31679584-31679642,31679740-31679854,31680701-31680790,
31682207-31683010
Length = 355
Score = 37.5 bits (83), Expect = 0.012
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 410 DYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
DY+ ++ PMDL T+R NL Y S ++F AD
Sbjct: 34 DYHAVIKCPMDLGTVRANLAAGRYPSHDDFAAD 66
>08_01_0619 +
5412058-5413224,5413357-5413476,5413755-5413831,
5414201-5414321
Length = 494
Score = 36.7 bits (81), Expect = 0.020
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 410 DYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
DY+ I+ PMDL T+++NL Y S E F D
Sbjct: 170 DYHAIIRNPMDLGTVKENLAFGRYPSHEAFATD 202
>08_01_0186 -
1561695-1561958,1562041-1562183,1562260-1562326,
1562417-1562529,1562603-1562671,1563831-1563870,
1563965-1564035,1565872-1566027,1566104-1566152,
1566228-1567631
Length = 791
Score = 36.7 bits (81), Expect = 0.020
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 374 PFLFPVN--HKLVADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
PFL PV+ + DY+ I+ +PMDL TI L Y + +F AD
Sbjct: 181 PFLAPVDVVQLNIPDYFDIIKKPMDLGTIEKKLNAGMYSTPWDFAAD 227
>02_02_0277 +
8489717-8491468,8491571-8491610,8491719-8491841,
8491959-8492014
Length = 656
Score = 35.5 bits (78), Expect = 0.047
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 410 DYYRIVSRPMDLQTIRDNLRQKHYQSREEFLADSIR 517
DY+ I+ PMDL TI+ L Y++ EF AD +R
Sbjct: 348 DYFAIIKHPMDLGTIKTRLTHGQYRNPREF-ADDVR 382
>08_01_0068 +
471729-472460,472578-472655,473270-473507,474130-474205,
474820-474961,475326-475619,476037-476249
Length = 590
Score = 34.3 bits (75), Expect = 0.11
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +2
Query: 287 ERRRTDPLVTLSSLLEDVLNHMRHLPDVQPFLFPVNHKL--VADYYRIVSRPMDLQTIRD 460
ER+R D L++ LE + M+ + +PF PV+ + DY+ I+ PMD TI
Sbjct: 231 ERQRDDR--ELTAALEAIKKVMK-MDAAEPFNTPVDPVALGIPDYFDIIDTPMDFGTICQ 287
Query: 461 NL-RQKHYQSREEFLAD 508
NL R Y + E+ D
Sbjct: 288 NLERGDKYMNSEDVYKD 304
>06_02_0325 +
14428065-14428799,14428916-14428993,14429607-14429844,
14431199-14431296,14431770-14432063,14432418-14432702
Length = 575
Score = 34.3 bits (75), Expect = 0.11
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +2
Query: 287 ERRRTDPLVTLSSLLEDVLNHMRHLPDVQPFLFPVNHKL--VADYYRIVSRPMDLQTIRD 460
ER+R D L++ LE + M+ + +PF PV+ + DY+ I+ PMD TI
Sbjct: 232 ERQRDDR--ELTAALEAIKKVMK-MDAAEPFNTPVDPVALGIPDYFDIIDTPMDFGTICQ 288
Query: 461 NL-RQKHYQSREEFLAD 508
NL R Y + E+ D
Sbjct: 289 NLERGDKYMNSEDVYKD 305
>06_01_0273 +
2022479-2022592,2022830-2022973,2023524-2023601,
2025361-2025585,2025684-2025782,2026177-2026235,
2026351-2026501,2026590-2026754
Length = 344
Score = 33.1 bits (72), Expect = 0.25
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +2
Query: 371 QPFLFPVN--HKLVADYYRIVSRPMDLQTIRDNLRQK 475
+PFL PV+ + DYY+I+++PMD TI+ + K
Sbjct: 94 EPFLKPVDVVGLQLDDYYKIITKPMDFSTIQKKMEGK 130
>02_03_0101 + 15233783-15234601
Length = 272
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 274 PAAGREAPHRSAGHPVVVAGRRPKSHAAFARCTALPVSC 390
P A +EA H +GH + G + H+A AR + C
Sbjct: 156 PRAAQEAHHPFSGHATLCLGNKASDHSAPARHATASLGC 194
>04_04_0202 - 23573425-23573949,23574285-23574593
Length = 277
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/39 (48%), Positives = 22/39 (56%)
Frame = +1
Query: 274 PAAGREAPHRSAGHPVVVAGRRPKSHAAFARCTALPVSC 390
PAAG+ RSA P VVA + S+ A A T L VSC
Sbjct: 240 PAAGKGGAKRSASGPAVVA-HKAASYGAAAAMTLL-VSC 276
>02_04_0102 + 19743276-19743420,19743500-19743966
Length = 203
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/46 (43%), Positives = 24/46 (52%)
Frame = +1
Query: 247 PPRLVRVLGPAAGREAPHRSAGHPVVVAGRRPKSHAAFARCTALPV 384
P RVLG A AP A PVV AG R K H ++A ++L V
Sbjct: 96 PRCAARVLGGAEQLCAPGGLAVAPVVAAGGREK-HGSYALASSLAV 140
>01_02_0059 -
10701859-10701963,10702034-10702153,10702534-10702609,
10702897-10703276
Length = 226
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3
Query: 258 RASTWSG-GRPRGAAPIRWSPCRRCWKTS*ITCGICPMYSPSC 383
R +SG PRGAA W RRC + T + P Y+ C
Sbjct: 124 RGGWYSGVAVPRGAAARSWQEQRRCPHKTSATNTLSPRYATRC 166
>04_04_0491 -
25605560-25605684,25605826-25605928,25606026-25607592,
25608694-25610198
Length = 1099
Score = 27.9 bits (59), Expect = 9.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 582 HSLGGHSETACWTIIKRAVLDD 517
H LG ++T CW++ + A L D
Sbjct: 336 HQLGYLTDTTCWSVCRNAALQD 357
>03_02_0895 +
12230683-12230844,12230937-12230991,12231106-12231169,
12231292-12231334,12231509-12231607,12231710-12231778,
12231912-12232245,12232317-12232471,12232592-12233287
Length = 558
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 326 LLEDVLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLA 505
++E +L+ + + F P + + V DY V+RP D T+R + Y + E+F
Sbjct: 84 IIEYILDTLEMRDTHELFAMPDDIQ-VTDYAERVNRPGDFATLRQKNKDGMYNTLEQFEN 142
Query: 506 D 508
D
Sbjct: 143 D 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,838,038
Number of Sequences: 37544
Number of extensions: 348296
Number of successful extensions: 916
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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