Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0162.Seq
(768 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34678| Best HMM Match : Bromodomain (HMM E-Value=9e-25) 53 3e-07
SB_4331| Best HMM Match : Bromodomain (HMM E-Value=3.30006e-41) 52 5e-07
SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38) 46 3e-05
SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_55405| Best HMM Match : Bromodomain (HMM E-Value=5.5e-16) 42 7e-04
SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0) 40 0.002
SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.021
SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.021
SB_54984| Best HMM Match : Bromodomain (HMM E-Value=4.1) 36 0.036
SB_48561| Best HMM Match : AAA (HMM E-Value=0) 33 0.25
SB_737| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-35) 33 0.25
SB_2262| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_22242| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 29 5.5
SB_11346| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_34678| Best HMM Match : Bromodomain (HMM E-Value=9e-25)
Length = 1137
Score = 52.8 bits (121), Expect = 3e-07
Identities = 22/50 (44%), Positives = 34/50 (68%)
Frame = +2
Query: 311 VTLSSLLEDVLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRD 460
V + L+E ++N M+ + + PF PVN K V DY++IV P+DLQT+R+
Sbjct: 745 VAMQLLMEGIINKMKEVDESWPFHTPVNPKTVPDYHKIVKNPIDLQTLRE 794
Score = 50.8 bits (116), Expect = 1e-06
Identities = 21/43 (48%), Positives = 30/43 (69%)
Frame = +2
Query: 374 PFLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQSREEFL 502
PF PVN K V DYY ++ PMD++T+R +++ +SREEFL
Sbjct: 818 PFHKPVNSKQVPDYYEVIKNPMDIETLRQHVQDGMCRSREEFL 860
Score = 35.9 bits (79), Expect = 0.036
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +3
Query: 3 GHMRTNKACPLYTGSVTGG-PASXXXXXXXXXXXXXXXXHLGYVDGTKLTLPTKIIKQTA 179
GHMRTNK CPLY + G + L V+GTK+TL + QT
Sbjct: 436 GHMRTNKNCPLYQEANPGSLSVAMTDEQVAEEEFNMPNDDLVKVEGTKITLGKAFLDQTN 495
Query: 180 E 182
E
Sbjct: 496 E 496
Score = 32.3 bits (70), Expect = 0.44
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 673 QVALSFIFENLLTTKLKIMPESWPFLKPVN 762
QVA+ + E ++ K+K + ESWPF PVN
Sbjct: 744 QVAMQLLMEGIIN-KMKEVDESWPFHTPVN 772
>SB_4331| Best HMM Match : Bromodomain (HMM E-Value=3.30006e-41)
Length = 305
Score = 52.0 bits (119), Expect = 5e-07
Identities = 26/81 (32%), Positives = 44/81 (54%)
Frame = +2
Query: 293 RRTDPLVTLSSLLEDVLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQ 472
+ DP V L + L+++L +++ PF PV DYY + PMDL+T+ + L+
Sbjct: 197 KEADPSV-LQTQLKNILTQVKNHASAWPFQKPVERAEAPDYYEHIKYPMDLKTMTERLKS 255
Query: 473 KHYQSREEFLADSIRSSRTAR 535
+Y S++ F+AD R + R
Sbjct: 256 GYYSSKKLFVADMRRIFQNCR 276
>SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1459
Score = 46.4 bits (105), Expect = 3e-05
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +2
Query: 338 VLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQKHY 481
+L M D PFL PVN K +YY+I+ +PMD T++ LR Y
Sbjct: 1303 ILAEMEKHDDAWPFLIPVNAKQFPEYYKIIRKPMDFHTMKIKLRDYQY 1350
>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
Length = 1301
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +2
Query: 338 VLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
VL++++ + PFL PV+ Y+ I+ PMDL TI + L Y + +EF +D
Sbjct: 363 VLDYLKKHNNAWPFLEPVDESYAPQYHEIIENPMDLSTIEEKLDTSKYATLDEFQSD 419
>SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 41.5 bits (93), Expect = 7e-04
Identities = 24/74 (32%), Positives = 35/74 (47%)
Frame = +2
Query: 287 ERRRTDPLVTLSSLLEDVLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRDNL 466
E R + VT + +L LN + D +PFL PVN DY V +PMD T+
Sbjct: 86 EEPREESWVTSARIL---LNFLMSREDAEPFLAPVNLADFPDYTDYVEQPMDFSTVWRKF 142
Query: 467 RQKHYQSREEFLAD 508
+ Y E+ ++D
Sbjct: 143 VENQYSDPEQLVSD 156
>SB_55405| Best HMM Match : Bromodomain (HMM E-Value=5.5e-16)
Length = 657
Score = 41.5 bits (93), Expect = 7e-04
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +2
Query: 326 LLEDVLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQ---SREE 496
+ E +L + D PF V+ K V +YY++++ PMDL TIR ++ +H+Q S E
Sbjct: 498 ICEKILLELFCHSDSIPFQQKVS-KSVPNYYKVITHPMDLSTIRAKIQPQHFQHYSSITE 556
Query: 497 FLAD 508
FL+D
Sbjct: 557 FLSD 560
>SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 786
Score = 40.7 bits (91), Expect = 0.001
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = +2
Query: 275 RRPAERRRTDPLVTLSSLLEDVLNHMRHLPDVQPFLFPVNH-KL-VADYYRIVSRPMDLQ 448
++PA + RT L LL+ VL + PF PV+ KL + DY+ I+ +PMDL
Sbjct: 104 QQPAPKTRTTN--QLQFLLKTVLKGLWRHHHAWPFREPVDAVKLNLPDYHTIIKKPMDLG 161
Query: 449 TIRDNLRQKHYQSREEFLAD 508
TI+ L Y +E + D
Sbjct: 162 TIKKKLENNEYPCAQECIED 181
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 374 PFLFPVNHKLVA--DYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
PF PV+ + + DY+ I+ +PMD+ I++ L + Y S EF AD
Sbjct: 340 PFYKPVDAEALGLHDYHDIIKQPMDMTEIKNKLENRAYDSPSEFAAD 386
>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
Length = 2276
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 362 PDVQPFLFPVNHKLVA--DYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
P+ PF PV+ KL+ DY+ IV PMDL TI+ L Y++ E+ D
Sbjct: 900 PESLPFRSPVDPKLLGCLDYFEIVRNPMDLSTIKRKLDNGQYKNPWEYCDD 950
>SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = +2
Query: 308 LVTLSSLLEDVLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQS 487
L L+ +L L+ ++ + F PV+ V DY ++ +PMD T+R + Y +
Sbjct: 602 LQPLNIVLRKTLDQVQTKDPGEIFSDPVDTNEVLDYLDVIKQPMDFSTMRSRIDSNFYHT 661
Query: 488 REEFLAD 508
E+F AD
Sbjct: 662 IEQFEAD 668
>SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1023
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +2
Query: 371 QPFLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLADSIRSSRTAR 535
+PFL K + DYY+I+ +P+D++ IR+ + Y+ E+ D R A+
Sbjct: 874 EPFLILPTKKDLPDYYQIIKQPVDIRKIRERINSHKYRCLEDLDEDFTLMCRNAQ 928
>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1449
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 365 DVQPFL-FPVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
D+Q F +PVN + Y R+++ PMD TI+ + Y + E F D
Sbjct: 1269 DIQGFFAYPVNDAIAPGYSRVITHPMDFSTIKTKIDSNSYTTIEAFRDD 1317
>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 36.7 bits (81), Expect = 0.021
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 410 DYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
DYY+++S P+ L I N+R Y + EE L D
Sbjct: 552 DYYKVISEPVCLSQIEGNIRDNKYATEEELLLD 584
Score = 35.5 bits (78), Expect = 0.048
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 362 PDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQSRE 493
P V+PFL + + DYY ++ +P+ L IR ++ Y S E
Sbjct: 354 PMVEPFLRLPSRRAYPDYYEVIKKPIALMKIRSQIKSGLYDSLE 397
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 371 QPFLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
+ L N + +YY ++S P+DL I+ L+ Y+ F AD
Sbjct: 43 ESMLLHENLRSSPEYYDVISTPIDLLKIQQRLKTDEYEDVGTFTAD 88
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +2
Query: 401 LVADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLADSIRSSRTAR 535
L +YY ++ P+DL+ I +R ++SR + +S R ++
Sbjct: 219 LYPEYYAVIKEPIDLKMISTRVRYTTWESRFGLIKMHQQSKRPSK 263
>SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1125
Score = 36.7 bits (81), Expect = 0.021
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +2
Query: 377 FLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQSREEF 499
FL P + DY + V +P+DL + N+R+KHY++ ++F
Sbjct: 529 FLQPFCLEKYDDYLQFVIKPVDLSLLEKNVRKKHYKTAKQF 569
>SB_54984| Best HMM Match : Bromodomain (HMM E-Value=4.1)
Length = 99
Score = 35.9 bits (79), Expect = 0.036
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +2
Query: 317 LSSLLEDVLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQKHY 481
++S + ++ + L PF++PV+ + DY+ +V P+DL TI + L + Y
Sbjct: 44 MTSRIMGCVDRLCELSLAGPFVYPVDVQAYPDYWSVVPYPIDLHTIIEKLGNRFY 98
>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
Length = 2021
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 377 FLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
F PV+ + V DY ++ PMDL T+ + + + Y + +L D
Sbjct: 1452 FSKPVDLEEVEDYLDVIQEPMDLSTMMEKIDRHQYSTCANYLLD 1495
>SB_737| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-35)
Length = 432
Score = 33.1 bits (72), Expect = 0.25
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 410 DYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
+YY+ ++ PMDL +++ L Y S EF+ D
Sbjct: 3 EYYKQIANPMDLSIVKEKLHSYQYHSVVEFVRD 35
>SB_2262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 688
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +2
Query: 377 FLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
FL PV+ YY+++ PMD T++ L Y F D
Sbjct: 568 FLRPVDPNDAPGYYKVIRTPMDFGTVKHKLESGVYDDYSAFHDD 611
>SB_22242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 436 DGSANYTR*SPTETLSKPRRILGRFNQIV 522
DGS +T SPTET K +L R +V
Sbjct: 61 DGSVEFTSISPTETPQKENEVLFRLGSLV 89
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 28.7 bits (61), Expect = 5.5
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +2
Query: 293 RRTDPLVTLSSLLEDVLNHMR--HLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRDNL 466
R D L L ++ N MR H+ +++ +N K+ +Y +I S DL+ ++
Sbjct: 216 RLRDELNQLMVQADEAKNQMRQSHMAEIEE----MNRKMAREYQKIESLRADLEGAHNSS 271
Query: 467 RQKHYQSREEFLADSIRSSR 526
Q+H +E L D + R
Sbjct: 272 AQEHAHQLQE-LRDEMEQQR 290
>SB_11346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1706
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +2
Query: 374 PFLFPVNHKLVA--DYYRIVSRPMDLQTIRDNLRQKHYQSREEFLADSIRSSRT 529
PFL PV+ + + DY+ + PM TI +K Y S L + + + T
Sbjct: 78 PFLEPVDAQSLGLYDYHERIKEPMCFTTIGQKFHEKVYTSITRSLREKVTLTAT 131
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,218,796
Number of Sequences: 59808
Number of extensions: 390911
Number of successful extensions: 803
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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