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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0162.Seq
         (768 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1...    60   2e-09
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ...    53   2e-07
At3g54610.1 68416.m06042 histone acetyltransferase (GCN5) nearly...    46   4e-05
At2g34900.2 68415.m04284 DNA-binding bromodomain-containing prot...    42   6e-04
At2g34900.1 68415.m04285 DNA-binding bromodomain-containing prot...    42   6e-04
At5g63330.1 68418.m07948 DNA-binding bromodomain-containing prot...    41   0.001
At1g20670.1 68414.m02589 DNA-binding bromodomain-containing prot...    40   0.001
At3g27260.1 68416.m03407 DNA-binding bromodomain-containing prot...    40   0.002
At5g46550.1 68418.m05731 DNA-binding bromodomain-containing prot...    38   0.006
At5g10550.1 68418.m01221 DNA-binding bromodomain-containing prot...    38   0.007
At1g06230.2 68414.m00659 DNA-binding bromodomain-containing prot...    38   0.007
At1g06230.1 68414.m00658 DNA-binding bromodomain-containing prot...    38   0.007
At3g01770.1 68416.m00116 DNA-binding bromodomain-containing prot...    37   0.013
At5g55040.1 68418.m06859 DNA-binding bromodomain-containing prot...    37   0.017
At1g76380.3 68414.m08876 DNA-binding bromodomain-containing prot...    36   0.030
At1g76380.2 68414.m08875 DNA-binding bromodomain-containing prot...    36   0.030
At1g76380.1 68414.m08874 DNA-binding bromodomain-containing prot...    36   0.030
At5g14270.1 68418.m01669 DNA-binding bromodomain-containing prot...    36   0.039
At5g65630.1 68418.m08256 DNA-binding bromodomain-containing prot...    34   0.12 
At1g73150.1 68414.m08460 DNA-binding bromodomain-containing prot...    34   0.12 
At1g58025.1 68414.m06576 DNA-binding bromodomain-containing prot...    34   0.12 
At3g52280.1 68416.m05746 DNA-binding bromodomain-containing prot...    33   0.16 
At1g17790.1 68414.m02202 DNA-binding bromodomain-containing prot...    33   0.21 
At1g05910.1 68414.m00620 cell division cycle protein 48-related ...    32   0.48 
At3g57980.1 68416.m06462 DNA-binding bromodomain-containing prot...    31   0.64 
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains...    28   7.9  
At1g29940.1 68414.m03658 DNA-directed RNA polymerase family prot...    28   7.9  

>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
            [Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
            Pfam domains, PF00439: Bromodomain and PF00240: Ubiquitin
            family
          Length = 1919

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
 Frame = +2

Query: 254  DSCEYLVRRPAERRRTDPLVTLSSLLEDVLNHMRHLPDVQP-FLFPVNHKLVADYYRIVS 430
            D  EY    P  +RR    V L+++LE +++ +R   +V   FL PV+ K   DY  IV 
Sbjct: 1785 DGAEYA---PQPKRRKKGEVGLANILERIVDTLRLKEEVSRLFLKPVSKKEAPDYLDIVE 1841

Query: 431  RPMDLQTIRDNLRQKHYQSREEFLAD 508
             PMDL TIRD +R+  Y++RE+F  D
Sbjct: 1842 NPMDLSTIRDKVRKIEYRNREQFRHD 1867



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 3    GHMRTNKACPLYTGSVTGGP 62
            GHMRTNK CP Y  +    P
Sbjct: 1406 GHMRTNKHCPRYRENTESQP 1425


>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
            bromodomain-containing protein low similarity to
            SP|P51123 Transcription initiation factor TFIID 230 kDa
            subunit {Drosophila melanogaster}; contains Pfam
            profiles: PF00439 bromodomain, PF00240: Ubiquitin family
          Length = 1700

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
 Frame = +2

Query: 281  PAERRRTDPLVTLSSLLEDVLNHMRHLPDVQPFLF--PVNHKLVADYYRIVSRPMDLQTI 454
            P  +RR    V L+++LE +++ +R       +LF  PV  K   +Y  IV  PMDL TI
Sbjct: 1567 PQPKRRKKGQVGLANILESIVDTLRVKEVNVSYLFLKPVTKKEAPNYLEIVKCPMDLSTI 1626

Query: 455  RDNLRQKHYQSREEFLAD 508
            RD +R+  Y+ R++F  D
Sbjct: 1627 RDKVRRMEYRDRQQFRHD 1644


>At3g54610.1 68416.m06042 histone acetyltransferase (GCN5) nearly
           identical to histone acetyltransferase GCN5 [Arabidopsis
           thaliana] GI:13591696; contains Pfam profiles PF00583:
           acetyltransferase, GNAT family, PF00439: Bromodomain
          Length = 568

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
 Frame = +2

Query: 317 LSSLLEDVLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRDNLR-QKHYQSRE 493
           L++L+  +L  M+   D  PF  PV+ + V DYY I+  P+DL+ I   +  +++Y + +
Sbjct: 460 LNALMRALLKTMQDHADAWPFKEPVDSRDVPDYYDIIKDPIDLKVIAKRVESEQYYVTLD 519

Query: 494 EFLADSIRSSRTAR 535
            F+AD+ R     R
Sbjct: 520 MFVADARRMFNNCR 533


>At2g34900.2 68415.m04284 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 276

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +2

Query: 374 PFLFPVNHKLVA--DYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
           PFL PV+ K +   DYY+++ +PMDL TI+  +    Y +  E  AD
Sbjct: 19  PFLEPVDVKGLGLHDYYKVIEKPMDLGTIKKKMESSEYSNVREIYAD 65


>At2g34900.1 68415.m04285 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 386

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +2

Query: 374 PFLFPVNHKLVA--DYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
           PFL PV+ K +   DYY+++ +PMDL TI+  +    Y +  E  AD
Sbjct: 129 PFLEPVDVKGLGLHDYYKVIEKPMDLGTIKKKMESSEYSNVREIYAD 175


>At5g63330.1 68418.m07948 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 477

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +2

Query: 332 EDVLNHMRHLPDVQPFLFPVNHKL--VADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLA 505
           E +LN +       PF  PV+  +  + DY+ ++  PMDL TIR  L +  Y S  +F A
Sbjct: 166 ETLLNRLWSHKSGWPFRTPVDPVMLNIPDYFNVIKHPMDLGTIRSRLCKGEYSSPLDFAA 225

Query: 506 D 508
           D
Sbjct: 226 D 226


>At1g20670.1 68414.m02589 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 652

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 23/76 (30%), Positives = 37/76 (48%)
 Frame = +2

Query: 281 PAERRRTDPLVTLSSLLEDVLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRD 460
           P E   T PL     LL  +L+ ++       +  PV+ + + DY+ I+  PMD  T+R+
Sbjct: 165 PVESGPTTPLPD-KKLLLFILDRLQKKDTYGVYSDPVDPEELPDYFEIIKNPMDFSTLRN 223

Query: 461 NLRQKHYQSREEFLAD 508
            L    Y + E+F  D
Sbjct: 224 KLDSGAYSTLEQFERD 239


>At3g27260.1 68416.m03407 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 813

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +2

Query: 287 ERRRTDPLVTLSSLLEDVLNHMRHLPDVQPFLFPVNH-KL-VADYYRIVSRPMDLQTIRD 460
           E   + P +TL    + +L  +   P    F  PV+  KL + DY   +  PMDL T++ 
Sbjct: 166 ETMTSTPNITLMKQCDTLLRKLWSHPHSWVFQAPVDVVKLNIPDYLTTIKHPMDLGTVKK 225

Query: 461 NLRQKHYQSREEFLAD 508
           NL    Y S  EF AD
Sbjct: 226 NLASGVYSSPHEFAAD 241


>At5g46550.1 68418.m05731 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 494

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 404 VADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
           + DY+ ++ +PMDL T++  L +  Y + +EF AD
Sbjct: 100 IPDYFNVIQKPMDLGTVKSKLLKNVYSNADEFAAD 134


>At5g10550.1 68418.m01221 DNA-binding bromodomain-containing protein
           low similarity to kinase [Gallus gallus] GI:1370092;
           contains Pfam profile PF00439: Bromodomain
          Length = 678

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 16/33 (48%), Positives = 24/33 (72%)
 Frame = +2

Query: 410 DYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
           DY+RIV +PMDL T++ NL +  Y+S  +F +D
Sbjct: 282 DYHRIVDKPMDLGTVKMNLEKGLYRSPIDFASD 314


>At1g06230.2 68414.m00659 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 766

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
 Frame = +2

Query: 320 SSLLEDVLNHMRHLPDVQPFLFPVNHKLVA--DYYRIVSRPMDLQTIRDNLRQKHYQSRE 493
           S+LLE ++ H +H      F  PV+ K +   DYY I+  PMDL TI+  L +  Y+S  
Sbjct: 426 SALLERLMKH-KH---GWVFNAPVDVKGLGLLDYYTIIEHPMDLGTIKSALMKNLYKSPR 481

Query: 494 EFLAD 508
           EF  D
Sbjct: 482 EFAED 486


>At1g06230.1 68414.m00658 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 766

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
 Frame = +2

Query: 320 SSLLEDVLNHMRHLPDVQPFLFPVNHKLVA--DYYRIVSRPMDLQTIRDNLRQKHYQSRE 493
           S+LLE ++ H +H      F  PV+ K +   DYY I+  PMDL TI+  L +  Y+S  
Sbjct: 426 SALLERLMKH-KH---GWVFNAPVDVKGLGLLDYYTIIEHPMDLGTIKSALMKNLYKSPR 481

Query: 494 EFLAD 508
           EF  D
Sbjct: 482 EFAED 486


>At3g01770.1 68416.m00116 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 620

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +2

Query: 404 VADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLADSIRSSRTA 532
           + DY+ I+  PMDL T++  L    Y S  EF AD   + R A
Sbjct: 160 IPDYFTIIKHPMDLGTVKSKLTSGTYSSPSEFSADVRLTFRNA 202


>At5g55040.1 68418.m06859 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 145

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 20/70 (28%), Positives = 36/70 (51%)
 Frame = +2

Query: 299 TDPLVTLSSLLEDVLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQKH 478
           T P++   SL E +L+ ++       +  PV+ + + DY+ ++  PMD  T+R  L    
Sbjct: 42  TTPILDKKSL-ELILDKLQKKDIYGVYAEPVDPEELPDYHDMIEHPMDFSTVRKKLANGS 100

Query: 479 YQSREEFLAD 508
           Y + EE  +D
Sbjct: 101 YSTLEELESD 110


>At1g76380.3 68414.m08876 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 579

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 386 PVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
           P + + + DYY I+  PMD  T+R  L    Y + E+F A+
Sbjct: 168 PADPEELPDYYEIIKNPMDFTTLRKKLESGAYTTLEQFEAN 208


>At1g76380.2 68414.m08875 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 580

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 386 PVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
           P + + + DYY I+  PMD  T+R  L    Y + E+F  D
Sbjct: 169 PADPEELPDYYEIIKNPMDFTTLRKKLESGAYTTLEQFEQD 209


>At1g76380.1 68414.m08874 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 579

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 386 PVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
           P + + + DYY I+  PMD  T+R  L    Y + E+F  D
Sbjct: 168 PADPEELPDYYEIIKNPMDFTTLRKKLESGAYTTLEQFEQD 208


>At5g14270.1 68418.m01669 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 688

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 404 VADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
           + DY+ ++  PMDL T+++ L    Y    EF AD
Sbjct: 168 ILDYFNVIEHPMDLGTVKNKLTSGTYSCPSEFAAD 202


>At5g65630.1 68418.m08256 DNA-binding bromodomain-containing protein
           similar to 5.9 kb fsh membrane protein [Drosophila
           melanogaster] GI:157455; contains Pfam profile PF00439:
           Bromodomain
          Length = 590

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 410 DYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
           DY+++V +PMDL T++ NL +  Y S  +F  D
Sbjct: 202 DYHQVVKKPMDLGTVKLNLDKGFYVSPIDFATD 234


>At1g73150.1 68414.m08460 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 461

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 410 DYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
           DY+ I+  PMDL T++  L +  Y+S  EF  D
Sbjct: 152 DYHNIIKEPMDLGTVKTRLSKSLYKSPLEFAED 184


>At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487; contains
           prenyl group binding site (CAAX box) Prosite:PS00294
          Length = 769

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
 Frame = +2

Query: 287 ERRRTDPLVTLSSL-LED---VLNHMRHLPDVQPFLFPVNHKL--VADYYRIVSRPMDLQ 448
           E ++TD  +  +   LED   V+  +  +    PF  PVN +   + DY+ I+  PMD  
Sbjct: 201 EEKKTDQNLRYNKQELEDSLIVIKKIMKMEAADPFNVPVNPEALGIPDYFDIIKTPMDFG 260

Query: 449 TIRDNLRQ-KHYQSREEFLAD 508
           TI +N  +   Y + E+   D
Sbjct: 261 TICNNFEKGNKYMNSEDVYKD 281


>At3g52280.1 68416.m05746 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 369

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +2

Query: 374 PFLFPVNHKLVA--DYYRIVSRPMDLQTIRDNLRQK 475
           PF+ PVN + +   DY+ ++ +PMD  TI++ +  K
Sbjct: 113 PFMHPVNVEGLGLHDYFEVIDKPMDFSTIKNQMEAK 148


>At1g17790.1 68414.m02202 DNA-binding bromodomain-containing protein
           similar to SP|P13709 Female sterile homeotic protein
           (Fragile-chorion membrane protein) {Drosophila
           melanogaster}; contains Pfam profile PF00439:
           Bromodomain
          Length = 487

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 377 FLFPVNHKLVA--DYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508
           F  PV+ K +   DY+ IV  PMDL T++  L +  Y+S  +F  D
Sbjct: 152 FNVPVDAKGLGLHDYHNIVKEPMDLGTVKTKLGKSLYKSPLDFAED 197


>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
            CDC48-related similar to SP|P54609 Cell division cycle
            protein 48 homolog {Arabidopsis thaliana}; contains Pfam
            profiles PF00004: ATPase AAA family, PF00439: Bromodomain
          Length = 1210

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 19/64 (29%), Positives = 27/64 (42%)
 Frame = +2

Query: 317  LSSLLEDVLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQSREE 496
            L   L DV N + +      F FPV  +   +Y  I+  PMD  T+   +    Y +   
Sbjct: 898  LRMCLRDVCNRILYDKRFSAFHFPVTDEDAPNYRSIIQIPMDTATLLQRVDTGQYLTCTP 957

Query: 497  FLAD 508
            FL D
Sbjct: 958  FLQD 961


>At3g57980.1 68416.m06462 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 632

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +2

Query: 320 SSLLEDVLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQ-SREE 496
           S  L D +  ++  P    F   +  +  +DYYRI+ + +D + IR  + + +Y+ +R +
Sbjct: 275 SQPLSDFIEILQSHPIGSHFSRRLETQETSDYYRIIRQHIDFEMIRSRVEEGYYKTARTK 334

Query: 497 FLAD 508
           F  D
Sbjct: 335 FFRD 338


>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
           similarity to mitochondrial ATPase (AAA family) Bcs1p,
           Saccharomyces cerevisiae, Swiss Prot:P32839
          Length = 248

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +2

Query: 287 ERRRTDPLVTLSSLLEDVLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRD 460
           ++++ DP VTLS LL  V        + +  +F  NHK   D   +    MD+  + D
Sbjct: 116 KKKKKDPKVTLSGLLNFVDGLWSSCVEERIIIFTTNHKEKLDPALLRPGRMDVHILMD 173


>At1g29940.1 68414.m03658 DNA-directed RNA polymerase family protein
           similar to SP|P22138 DNA-directed RNA polymerase I 135
           kDa polypeptide (EC 2.7.7.6) (RNA polymerase I subunit
           2) {Saccharomyces cerevisiae}; contains Pfam profiles
           PF04563; RNA polymerase beta subunit, PF04560: RNA
           polymerase Rpb2 domain 7, PF04561: RNA polymerase Rpb2
           domain 2, PF04565: RNA polymerase Rpb2 domain 3,
           PF00562: RNA polymerase Rpb2 domain 6
          Length = 1114

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 709 TTKLKIMPESWPFLKPVN 762
           TT  K++PESW FL PV+
Sbjct: 428 TTVRKLLPESWGFLCPVH 445


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,570,205
Number of Sequences: 28952
Number of extensions: 262851
Number of successful extensions: 624
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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