BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= pg--0162.Seq (768 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 60 2e-09 At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 53 2e-07 At3g54610.1 68416.m06042 histone acetyltransferase (GCN5) nearly... 46 4e-05 At2g34900.2 68415.m04284 DNA-binding bromodomain-containing prot... 42 6e-04 At2g34900.1 68415.m04285 DNA-binding bromodomain-containing prot... 42 6e-04 At5g63330.1 68418.m07948 DNA-binding bromodomain-containing prot... 41 0.001 At1g20670.1 68414.m02589 DNA-binding bromodomain-containing prot... 40 0.001 At3g27260.1 68416.m03407 DNA-binding bromodomain-containing prot... 40 0.002 At5g46550.1 68418.m05731 DNA-binding bromodomain-containing prot... 38 0.006 At5g10550.1 68418.m01221 DNA-binding bromodomain-containing prot... 38 0.007 At1g06230.2 68414.m00659 DNA-binding bromodomain-containing prot... 38 0.007 At1g06230.1 68414.m00658 DNA-binding bromodomain-containing prot... 38 0.007 At3g01770.1 68416.m00116 DNA-binding bromodomain-containing prot... 37 0.013 At5g55040.1 68418.m06859 DNA-binding bromodomain-containing prot... 37 0.017 At1g76380.3 68414.m08876 DNA-binding bromodomain-containing prot... 36 0.030 At1g76380.2 68414.m08875 DNA-binding bromodomain-containing prot... 36 0.030 At1g76380.1 68414.m08874 DNA-binding bromodomain-containing prot... 36 0.030 At5g14270.1 68418.m01669 DNA-binding bromodomain-containing prot... 36 0.039 At5g65630.1 68418.m08256 DNA-binding bromodomain-containing prot... 34 0.12 At1g73150.1 68414.m08460 DNA-binding bromodomain-containing prot... 34 0.12 At1g58025.1 68414.m06576 DNA-binding bromodomain-containing prot... 34 0.12 At3g52280.1 68416.m05746 DNA-binding bromodomain-containing prot... 33 0.16 At1g17790.1 68414.m02202 DNA-binding bromodomain-containing prot... 33 0.21 At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 32 0.48 At3g57980.1 68416.m06462 DNA-binding bromodomain-containing prot... 31 0.64 At4g05380.1 68417.m00820 AAA-type ATPase family protein contains... 28 7.9 At1g29940.1 68414.m03658 DNA-directed RNA polymerase family prot... 28 7.9 >At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13 [Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains Pfam domains, PF00439: Bromodomain and PF00240: Ubiquitin family Length = 1919 Score = 59.7 bits (138), Expect = 2e-09 Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Frame = +2 Query: 254 DSCEYLVRRPAERRRTDPLVTLSSLLEDVLNHMRHLPDVQP-FLFPVNHKLVADYYRIVS 430 D EY P +RR V L+++LE +++ +R +V FL PV+ K DY IV Sbjct: 1785 DGAEYA---PQPKRRKKGEVGLANILERIVDTLRLKEEVSRLFLKPVSKKEAPDYLDIVE 1841 Query: 431 RPMDLQTIRDNLRQKHYQSREEFLAD 508 PMDL TIRD +R+ Y++RE+F D Sbjct: 1842 NPMDLSTIRDKVRKIEYRNREQFRHD 1867 Score = 28.7 bits (61), Expect = 4.5 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = +3 Query: 3 GHMRTNKACPLYTGSVTGGP 62 GHMRTNK CP Y + P Sbjct: 1406 GHMRTNKHCPRYRENTESQP 1425 >At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding bromodomain-containing protein low similarity to SP|P51123 Transcription initiation factor TFIID 230 kDa subunit {Drosophila melanogaster}; contains Pfam profiles: PF00439 bromodomain, PF00240: Ubiquitin family Length = 1700 Score = 52.8 bits (121), Expect = 2e-07 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 2/78 (2%) Frame = +2 Query: 281 PAERRRTDPLVTLSSLLEDVLNHMRHLPDVQPFLF--PVNHKLVADYYRIVSRPMDLQTI 454 P +RR V L+++LE +++ +R +LF PV K +Y IV PMDL TI Sbjct: 1567 PQPKRRKKGQVGLANILESIVDTLRVKEVNVSYLFLKPVTKKEAPNYLEIVKCPMDLSTI 1626 Query: 455 RDNLRQKHYQSREEFLAD 508 RD +R+ Y+ R++F D Sbjct: 1627 RDKVRRMEYRDRQQFRHD 1644 >At3g54610.1 68416.m06042 histone acetyltransferase (GCN5) nearly identical to histone acetyltransferase GCN5 [Arabidopsis thaliana] GI:13591696; contains Pfam profiles PF00583: acetyltransferase, GNAT family, PF00439: Bromodomain Length = 568 Score = 45.6 bits (103), Expect = 4e-05 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%) Frame = +2 Query: 317 LSSLLEDVLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRDNLR-QKHYQSRE 493 L++L+ +L M+ D PF PV+ + V DYY I+ P+DL+ I + +++Y + + Sbjct: 460 LNALMRALLKTMQDHADAWPFKEPVDSRDVPDYYDIIKDPIDLKVIAKRVESEQYYVTLD 519 Query: 494 EFLADSIRSSRTAR 535 F+AD+ R R Sbjct: 520 MFVADARRMFNNCR 533 >At2g34900.2 68415.m04284 DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO:IPR001487 Length = 276 Score = 41.5 bits (93), Expect = 6e-04 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%) Frame = +2 Query: 374 PFLFPVNHKLVA--DYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508 PFL PV+ K + DYY+++ +PMDL TI+ + Y + E AD Sbjct: 19 PFLEPVDVKGLGLHDYYKVIEKPMDLGTIKKKMESSEYSNVREIYAD 65 >At2g34900.1 68415.m04285 DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO:IPR001487 Length = 386 Score = 41.5 bits (93), Expect = 6e-04 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%) Frame = +2 Query: 374 PFLFPVNHKLVA--DYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508 PFL PV+ K + DYY+++ +PMDL TI+ + Y + E AD Sbjct: 129 PFLEPVDVKGLGLHDYYKVIEKPMDLGTIKKKMESSEYSNVREIYAD 175 >At5g63330.1 68418.m07948 DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO:IPR001487 Length = 477 Score = 40.7 bits (91), Expect = 0.001 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%) Frame = +2 Query: 332 EDVLNHMRHLPDVQPFLFPVNHKL--VADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLA 505 E +LN + PF PV+ + + DY+ ++ PMDL TIR L + Y S +F A Sbjct: 166 ETLLNRLWSHKSGWPFRTPVDPVMLNIPDYFNVIKHPMDLGTIRSRLCKGEYSSPLDFAA 225 Query: 506 D 508 D Sbjct: 226 D 226 >At1g20670.1 68414.m02589 DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO:IPR001487 Length = 652 Score = 40.3 bits (90), Expect = 0.001 Identities = 23/76 (30%), Positives = 37/76 (48%) Frame = +2 Query: 281 PAERRRTDPLVTLSSLLEDVLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRD 460 P E T PL LL +L+ ++ + PV+ + + DY+ I+ PMD T+R+ Sbjct: 165 PVESGPTTPLPD-KKLLLFILDRLQKKDTYGVYSDPVDPEELPDYFEIIKNPMDFSTLRN 223 Query: 461 NLRQKHYQSREEFLAD 508 L Y + E+F D Sbjct: 224 KLDSGAYSTLEQFERD 239 >At3g27260.1 68416.m03407 DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO:IPR001487 Length = 813 Score = 39.9 bits (89), Expect = 0.002 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Frame = +2 Query: 287 ERRRTDPLVTLSSLLEDVLNHMRHLPDVQPFLFPVNH-KL-VADYYRIVSRPMDLQTIRD 460 E + P +TL + +L + P F PV+ KL + DY + PMDL T++ Sbjct: 166 ETMTSTPNITLMKQCDTLLRKLWSHPHSWVFQAPVDVVKLNIPDYLTTIKHPMDLGTVKK 225 Query: 461 NLRQKHYQSREEFLAD 508 NL Y S EF AD Sbjct: 226 NLASGVYSSPHEFAAD 241 >At5g46550.1 68418.m05731 DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO:IPR001487 Length = 494 Score = 38.3 bits (85), Expect = 0.006 Identities = 13/35 (37%), Positives = 23/35 (65%) Frame = +2 Query: 404 VADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508 + DY+ ++ +PMDL T++ L + Y + +EF AD Sbjct: 100 IPDYFNVIQKPMDLGTVKSKLLKNVYSNADEFAAD 134 >At5g10550.1 68418.m01221 DNA-binding bromodomain-containing protein low similarity to kinase [Gallus gallus] GI:1370092; contains Pfam profile PF00439: Bromodomain Length = 678 Score = 37.9 bits (84), Expect = 0.007 Identities = 16/33 (48%), Positives = 24/33 (72%) Frame = +2 Query: 410 DYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508 DY+RIV +PMDL T++ NL + Y+S +F +D Sbjct: 282 DYHRIVDKPMDLGTVKMNLEKGLYRSPIDFASD 314 >At1g06230.2 68414.m00659 DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO:IPR001487 Length = 766 Score = 37.9 bits (84), Expect = 0.007 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Frame = +2 Query: 320 SSLLEDVLNHMRHLPDVQPFLFPVNHKLVA--DYYRIVSRPMDLQTIRDNLRQKHYQSRE 493 S+LLE ++ H +H F PV+ K + DYY I+ PMDL TI+ L + Y+S Sbjct: 426 SALLERLMKH-KH---GWVFNAPVDVKGLGLLDYYTIIEHPMDLGTIKSALMKNLYKSPR 481 Query: 494 EFLAD 508 EF D Sbjct: 482 EFAED 486 >At1g06230.1 68414.m00658 DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO:IPR001487 Length = 766 Score = 37.9 bits (84), Expect = 0.007 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Frame = +2 Query: 320 SSLLEDVLNHMRHLPDVQPFLFPVNHKLVA--DYYRIVSRPMDLQTIRDNLRQKHYQSRE 493 S+LLE ++ H +H F PV+ K + DYY I+ PMDL TI+ L + Y+S Sbjct: 426 SALLERLMKH-KH---GWVFNAPVDVKGLGLLDYYTIIEHPMDLGTIKSALMKNLYKSPR 481 Query: 494 EFLAD 508 EF D Sbjct: 482 EFAED 486 >At3g01770.1 68416.m00116 DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO:IPR001487 Length = 620 Score = 37.1 bits (82), Expect = 0.013 Identities = 17/43 (39%), Positives = 23/43 (53%) Frame = +2 Query: 404 VADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLADSIRSSRTA 532 + DY+ I+ PMDL T++ L Y S EF AD + R A Sbjct: 160 IPDYFTIIKHPMDLGTVKSKLTSGTYSSPSEFSADVRLTFRNA 202 >At5g55040.1 68418.m06859 DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO:IPR001487 Length = 145 Score = 36.7 bits (81), Expect = 0.017 Identities = 20/70 (28%), Positives = 36/70 (51%) Frame = +2 Query: 299 TDPLVTLSSLLEDVLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQKH 478 T P++ SL E +L+ ++ + PV+ + + DY+ ++ PMD T+R L Sbjct: 42 TTPILDKKSL-ELILDKLQKKDIYGVYAEPVDPEELPDYHDMIEHPMDFSTVRKKLANGS 100 Query: 479 YQSREEFLAD 508 Y + EE +D Sbjct: 101 YSTLEELESD 110 >At1g76380.3 68414.m08876 DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO:IPR001487 Length = 579 Score = 35.9 bits (79), Expect = 0.030 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = +2 Query: 386 PVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508 P + + + DYY I+ PMD T+R L Y + E+F A+ Sbjct: 168 PADPEELPDYYEIIKNPMDFTTLRKKLESGAYTTLEQFEAN 208 >At1g76380.2 68414.m08875 DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO:IPR001487 Length = 580 Score = 35.9 bits (79), Expect = 0.030 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = +2 Query: 386 PVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508 P + + + DYY I+ PMD T+R L Y + E+F D Sbjct: 169 PADPEELPDYYEIIKNPMDFTTLRKKLESGAYTTLEQFEQD 209 >At1g76380.1 68414.m08874 DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO:IPR001487 Length = 579 Score = 35.9 bits (79), Expect = 0.030 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = +2 Query: 386 PVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508 P + + + DYY I+ PMD T+R L Y + E+F D Sbjct: 168 PADPEELPDYYEIIKNPMDFTTLRKKLESGAYTTLEQFEQD 208 >At5g14270.1 68418.m01669 DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO:IPR001487 Length = 688 Score = 35.5 bits (78), Expect = 0.039 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +2 Query: 404 VADYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508 + DY+ ++ PMDL T+++ L Y EF AD Sbjct: 168 ILDYFNVIEHPMDLGTVKNKLTSGTYSCPSEFAAD 202 >At5g65630.1 68418.m08256 DNA-binding bromodomain-containing protein similar to 5.9 kb fsh membrane protein [Drosophila melanogaster] GI:157455; contains Pfam profile PF00439: Bromodomain Length = 590 Score = 33.9 bits (74), Expect = 0.12 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = +2 Query: 410 DYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508 DY+++V +PMDL T++ NL + Y S +F D Sbjct: 202 DYHQVVKKPMDLGTVKLNLDKGFYVSPIDFATD 234 >At1g73150.1 68414.m08460 DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO:IPR001487 Length = 461 Score = 33.9 bits (74), Expect = 0.12 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +2 Query: 410 DYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508 DY+ I+ PMDL T++ L + Y+S EF D Sbjct: 152 DYHNIIKEPMDLGTVKTRLSKSLYKSPLEFAED 184 >At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO:IPR001487; contains prenyl group binding site (CAAX box) Prosite:PS00294 Length = 769 Score = 33.9 bits (74), Expect = 0.12 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 7/81 (8%) Frame = +2 Query: 287 ERRRTDPLVTLSSL-LED---VLNHMRHLPDVQPFLFPVNHKL--VADYYRIVSRPMDLQ 448 E ++TD + + LED V+ + + PF PVN + + DY+ I+ PMD Sbjct: 201 EEKKTDQNLRYNKQELEDSLIVIKKIMKMEAADPFNVPVNPEALGIPDYFDIIKTPMDFG 260 Query: 449 TIRDNLRQ-KHYQSREEFLAD 508 TI +N + Y + E+ D Sbjct: 261 TICNNFEKGNKYMNSEDVYKD 281 >At3g52280.1 68416.m05746 DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO:IPR001487 Length = 369 Score = 33.5 bits (73), Expect = 0.16 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%) Frame = +2 Query: 374 PFLFPVNHKLVA--DYYRIVSRPMDLQTIRDNLRQK 475 PF+ PVN + + DY+ ++ +PMD TI++ + K Sbjct: 113 PFMHPVNVEGLGLHDYFEVIDKPMDFSTIKNQMEAK 148 >At1g17790.1 68414.m02202 DNA-binding bromodomain-containing protein similar to SP|P13709 Female sterile homeotic protein (Fragile-chorion membrane protein) {Drosophila melanogaster}; contains Pfam profile PF00439: Bromodomain Length = 487 Score = 33.1 bits (72), Expect = 0.21 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = +2 Query: 377 FLFPVNHKLVA--DYYRIVSRPMDLQTIRDNLRQKHYQSREEFLAD 508 F PV+ K + DY+ IV PMDL T++ L + Y+S +F D Sbjct: 152 FNVPVDAKGLGLHDYHNIVKEPMDLGTVKTKLGKSLYKSPLDFAED 197 >At1g05910.1 68414.m00620 cell division cycle protein 48-related / CDC48-related similar to SP|P54609 Cell division cycle protein 48 homolog {Arabidopsis thaliana}; contains Pfam profiles PF00004: ATPase AAA family, PF00439: Bromodomain Length = 1210 Score = 31.9 bits (69), Expect = 0.48 Identities = 19/64 (29%), Positives = 27/64 (42%) Frame = +2 Query: 317 LSSLLEDVLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQSREE 496 L L DV N + + F FPV + +Y I+ PMD T+ + Y + Sbjct: 898 LRMCLRDVCNRILYDKRFSAFHFPVTDEDAPNYRSIIQIPMDTATLLQRVDTGQYLTCTP 957 Query: 497 FLAD 508 FL D Sbjct: 958 FLQD 961 >At3g57980.1 68416.m06462 DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO:IPR001487 Length = 632 Score = 31.5 bits (68), Expect = 0.64 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = +2 Query: 320 SSLLEDVLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRDNLRQKHYQ-SREE 496 S L D + ++ P F + + +DYYRI+ + +D + IR + + +Y+ +R + Sbjct: 275 SQPLSDFIEILQSHPIGSHFSRRLETQETSDYYRIIRQHIDFEMIRSRVEEGYYKTARTK 334 Query: 497 FLAD 508 F D Sbjct: 335 FFRD 338 >At4g05380.1 68417.m00820 AAA-type ATPase family protein contains similarity to mitochondrial ATPase (AAA family) Bcs1p, Saccharomyces cerevisiae, Swiss Prot:P32839 Length = 248 Score = 27.9 bits (59), Expect = 7.9 Identities = 17/58 (29%), Positives = 27/58 (46%) Frame = +2 Query: 287 ERRRTDPLVTLSSLLEDVLNHMRHLPDVQPFLFPVNHKLVADYYRIVSRPMDLQTIRD 460 ++++ DP VTLS LL V + + +F NHK D + MD+ + D Sbjct: 116 KKKKKDPKVTLSGLLNFVDGLWSSCVEERIIIFTTNHKEKLDPALLRPGRMDVHILMD 173 >At1g29940.1 68414.m03658 DNA-directed RNA polymerase family protein similar to SP|P22138 DNA-directed RNA polymerase I 135 kDa polypeptide (EC 2.7.7.6) (RNA polymerase I subunit 2) {Saccharomyces cerevisiae}; contains Pfam profiles PF04563; RNA polymerase beta subunit, PF04560: RNA polymerase Rpb2 domain 7, PF04561: RNA polymerase Rpb2 domain 2, PF04565: RNA polymerase Rpb2 domain 3, PF00562: RNA polymerase Rpb2 domain 6 Length = 1114 Score = 27.9 bits (59), Expect = 7.9 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = +1 Query: 709 TTKLKIMPESWPFLKPVN 762 TT K++PESW FL PV+ Sbjct: 428 TTVRKLLPESWGFLCPVH 445 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,570,205 Number of Sequences: 28952 Number of extensions: 262851 Number of successful extensions: 624 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 605 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 623 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1721869952 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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