Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0161.Seq
         (757 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    23   2.0  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    23   2.0  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   6.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.0  

>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 453 YLRVTSSATSEDINLDYFR 509
           Y    + A  EDIN+DYF+
Sbjct: 121 YSTTITRARFEDINMDYFK 139


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 453 YLRVTSSATSEDINLDYFR 509
           Y    + A  EDIN+DYF+
Sbjct: 121 YSTTITRARFEDINMDYFK 139


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 169 APKPYARWTRYRRRPSLCASSDSDNEHRGS 80
           AP+  +R T+     S  +S+D D+E R S
Sbjct: 122 APRTASRETKSSESDSGASSADPDDELRSS 151


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 133  RRPSLCASSDSDNEHRGS 80
            RR S+ ASS  D+ H G+
Sbjct: 1163 RRRSMSASSRGDHHHLGA 1180


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 133  RRPSLCASSDSDNEHRGS 80
            RR S+ ASS  D+ H G+
Sbjct: 1163 RRRSMSASSRGDHHHLGA 1180


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 133  RRPSLCASSDSDNEHRGS 80
            RR S+ ASS  D+ H G+
Sbjct: 1163 RRRSMSASSRGDHHHLGA 1180


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 133  RRPSLCASSDSDNEHRGS 80
            RR S+ ASS  D+ H G+
Sbjct: 1163 RRRSMSASSRGDHHHLGA 1180


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,464
Number of Sequences: 336
Number of extensions: 4055
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)