Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0161.Seq
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...    29   0.72 
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...    29   0.72 
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.2  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    26   5.0  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    25   8.8  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   8.8  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 311 DRFYKKFLVKIYRFTSLDASSRSNKA 234
           +  Y K LVK+YRF +    SR NKA
Sbjct: 21  ENVYLKLLVKLYRFLARRTDSRFNKA 46


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 311 DRFYKKFLVKIYRFTSLDASSRSNKA 234
           +  Y K LVK+YRF +    SR NKA
Sbjct: 21  ENVYLKLLVKLYRFLARRTDSRFNKA 46


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 627 NSARDRYTVPWGFNGFINYI 568
           NS  DRYT+P+   G I+Y+
Sbjct: 339 NSGSDRYTIPFFLQGNIDYV 358


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 317 RFDRFYKKFLVKIYRFTSLDASSRSNK 237
           +F    K+FL K+Y+ T  + +SRS K
Sbjct: 4   KFVELRKEFLTKLYKSTPSEQTSRSEK 30


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 628 KVKPGFEKYYVLSSFQCSSGCMYPNYTV 711
           K+  GF+K+Y    F C  G + P + +
Sbjct: 76  KIVSGFKKFYHNKPFLCDHGGILPKFEI 103


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 455 IKLICR*KSQKKCSLLSPKIKHMCNKLIKYW 363
           IKLI +  S++  +L    I  +C+ LI YW
Sbjct: 249 IKLILKVLSERIDALSDAVIYELCDSLIPYW 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,195
Number of Sequences: 5004
Number of extensions: 62398
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)