Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0161.Seq
         (757 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65910.1 68418.m08296 BSD domain-containing protein contains ...    30   1.4  
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family...    29   4.4  
At1g11840.2 68414.m01362 lactoylglutathione lyase, putative / gl...    29   4.4  
At1g11840.1 68414.m01361 lactoylglutathione lyase, putative / gl...    29   4.4  
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ...    28   5.8  

>At5g65910.1 68418.m08296 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 432

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = -2

Query: 162 NPMQGGPATGDDHPCARLQTQIMS---IEARSTGDGSGVCSGRLFCVQVDGDD 13
           NP++      D HP    + QI+    IE RST   S   S R   VQVD +D
Sbjct: 289 NPVESSDVETDKHPIESKEIQIVDKSVIEERSTSTAS---SSRFINVQVDDED 338


>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
            protein contains proline-rich extensin domains,
            INTERPRO:IPR002965
          Length = 1696

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -2

Query: 207  EQGTNVIYKSGRVLRNPMQGGPATGDDHPCARLQTQIMSIEARSTGDGSGV 55
            +   + + K   +LR P  G P      P + +Q    ++E +STG  + V
Sbjct: 1455 QSNNSYVRKGNSLLRKPSHGSPGAALGIPPSAIQLNHFTVEDKSTGSSNMV 1505


>At1g11840.2 68414.m01362 lactoylglutathione lyase, putative /
           glyoxalase I, putative highly similar to putative
           lactoylglutathione lyase SP:Q39366 from [Brassica
           oleracea]
          Length = 283

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -2

Query: 201 GTNVIYKSGRVLR--NPMQGGPATGDDHPCARLQTQIMS 91
           GT+ +YKSG V++  N   GG  T +  P   L T+I+S
Sbjct: 223 GTDDVYKSGEVIKIVNQELGGKITREAGPLPGLGTKIVS 261


>At1g11840.1 68414.m01361 lactoylglutathione lyase, putative /
           glyoxalase I, putative highly similar to putative
           lactoylglutathione lyase SP:Q39366 from [Brassica
           oleracea]
          Length = 283

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -2

Query: 201 GTNVIYKSGRVLR--NPMQGGPATGDDHPCARLQTQIMS 91
           GT+ +YKSG V++  N   GG  T +  P   L T+I+S
Sbjct: 223 GTDDVYKSGEVIKIVNQELGGKITREAGPLPGLGTKIVS 261


>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
           XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
           domain PF03159: Putative 5'-3' exonuclease domain
          Length = 947

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +2

Query: 131 SPVAGPPCIGFRSTLPLLYITFVPCSFSHISRP 229
           SPV G PCI     L + Y+   P   SHIS P
Sbjct: 671 SPVNGLPCIEQNRALNVTYL--CPAKHSHISEP 701


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,836,013
Number of Sequences: 28952
Number of extensions: 330519
Number of successful extensions: 784
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)