Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0160.Seq
(590 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ... 63 3e-11
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 29 0.38
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 27 2.0
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 27 2.0
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 27 2.0
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 26 3.6
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo... 26 4.7
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 25 8.3
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 25 8.3
>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 63.3 bits (147), Expect = 3e-11
Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Frame = +1
Query: 331 YFK-VQKRAAASQNPMTDP----GMMTDMLKGNLTNVLPMIVIGGWINWMFSGFLTTKVP 495
Y K V A + NP+ D G+M M KGN+ V+P +I WIN FSGF+ K+P
Sbjct: 88 YLKPVDPNAPKAANPLMDDKTLEGLMESM-KGNMLMVVPQTIIMTWINEFFSGFILLKLP 146
Query: 496 FPLTRDSSRCFSAALS*RIWDASWGSSASW 585
FPLT F + ++ + D W SS SW
Sbjct: 147 FPLTLRFKSIFQSGVATQDLDVQWVSSISW 176
Score = 54.4 bits (125), Expect = 1e-08
Identities = 25/60 (41%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Frame = +2
Query: 80 MPELLLDPNIRFWVFLPIVIITFLVGIVRHYVSLIL-SSQKKIELIQVQDSQVMIRARLL 256
M +LLLDP +R WV LPI+ + L+GI+RH +++L SS KK+ ++++ +++ RA L
Sbjct: 1 MQKLLLDPALRNWVLLPIMFVMILIGILRHNATILLQSSPKKLSKEEIREQRLLQRAYAL 60
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 29.5 bits (63), Expect = 0.38
Identities = 23/58 (39%), Positives = 35/58 (60%)
Frame = +2
Query: 29 IKSITYDISEI*NLLSQMPELLLDPNIRFWVFLPIVIITFLVGIVRHYVSLILSSQKK 202
+ + T DI ++ LLS++P LLD + F V+L V T + IV+ ++ ILS QKK
Sbjct: 1156 VNTNTADIDDLYRLLSKIPTNLLDLPM-FQVYLGCV-DTLIQTIVKQ-IAQILSKQKK 1210
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 27.1 bits (57), Expect = 2.0
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 190 LSKKD*TYSGSR*SSNDTCEVARENGKYLPRQSFAMRRHWFNNEETGYFKVQKR 351
LS KD + SR S DT EV ++NG Q ++R +NE+ ++++ R
Sbjct: 323 LSLKDYSAVVSRVISTDTLEVRKDNGVECRIQLSSIRHPRPSNEKEAPYQLEAR 376
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 27.1 bits (57), Expect = 2.0
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 116 WVFLPIV-IITFLVGIVRHYVSLILSSQKKIELIQVQDSQVMIRARLLERTGSI-YLGSH 289
W+ LPI I+ LVGI++HY++ S L +V S +I + L GSI Y G
Sbjct: 460 WIDLPIAFILGCLVGILQHYIA--PRSTMYNSLFEVTGS--IITSFLSRAFGSIRYSGGR 515
Query: 290 LLC 298
C
Sbjct: 516 RFC 518
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -1
Query: 380 SVIGFCEAAALFCTLK*PVSSLLNQWRRIANDCLGRYFPFS 258
SV+GFCE A P S + W + LG F ++
Sbjct: 283 SVVGFCEGAVAGLVAITPGSGFVPPWAAVVIGALGAVFCYA 323
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 3.6
Identities = 22/94 (23%), Positives = 39/94 (41%)
Frame = +2
Query: 77 QMPELLLDPNIRFWVFLPIVIITFLVGIVRHYVSLILSSQKKIELIQVQDSQVMIRARLL 256
+ P +L ++ + + P + L V HYV+ + ++ + VQ IR L+
Sbjct: 167 EFPLTVLIHHVMLYQYYPKSLQEALWAAVEHYVNNSGEAYSTVQKLAVQKKIGNIRMYLV 226
Query: 257 ERTGSIYLGSHLLCVATGLTMRKQAISKYRKELL 358
LGS C+ + Q+ + RK LL
Sbjct: 227 NPRDIFALGSTCNCIVVS-SSNFQSYVQLRKPLL 259
>SPBC2A9.06c |||di-trans,
poly-cis-decaprenylcistransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 492 YFGCKKTTEHPVNPSSDDNHRQDIC 418
Y G K T H NP S D Q+ C
Sbjct: 124 YLGGDKCTVHVTNPCSPDEKNQNDC 148
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 13 IHILKNKINYLRHK*NIESAKPNARVTFRSKYPILGVST 129
+H+ K K+N + ++ AK +A +T K P++ T
Sbjct: 480 LHLAKMKLNNKNDESSLSPAKSHAVITQAPKIPLISTFT 518
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +1
Query: 352 AAASQNPMTDPGMMTDMLKGNLTNVLPMIVIGGWINWMFSGFLTTKVPF 498
A+ PMT PG++ D+ G + +V G ++ S F T+ F
Sbjct: 628 ASVLAKPMTPPGLIGDISCGTTISNFTDLVFYGHVDGKISIFSKTQYRF 676
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,476,161
Number of Sequences: 5004
Number of extensions: 50626
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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