Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0160.Seq
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0610 + 18944084-18944244,18944471-18944564,18944809-189449...    84   9e-17

>09_04_0610 +
           18944084-18944244,18944471-18944564,18944809-18944928,
           18945012-18945060,18945985-18946084,18946196-18946257,
           18946365-18946426,18947080-18947187
          Length = 251

 Score = 83.8 bits (198), Expect = 9e-17
 Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 2/112 (1%)
 Frame = +1

Query: 256 RENGKYLPRQSFAMRRHWFNNEETGYFKVQKRAA--ASQNPMTDPGMMTDMLKGNLTNVL 429
           R N +Y+P ++F  R+ ++ NEE G   V K  A  A     +DP M  DM+K NL+ ++
Sbjct: 64  RINSQYIPAKAFKSRKVYYTNEENGLLHVPKEEAQKAQAAMFSDPNMAMDMMKKNLSMIV 123

Query: 430 PMIVIGGWINWMFSGFLTTKVPFPLTRDSSRCFSAALS*RIWDASWGSSASW 585
           P  +   W+N+ FSGF+  K+PFPLT          +     D S+ SS SW
Sbjct: 124 PQTLTFAWVNFFFSGFVAAKIPFPLTPRFRGMLQNGIDLSTVDVSYVSSRSW 175



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
 Frame = +2

Query: 86  ELLLDPNIRFWVFLPIVIITFLVGIVRHYVSLIL---SSQKKIELIQVQDSQVMIRARLL 256
           EL+LD  IR WV +P+ ++  L+G++R++V+ ++   S+    +   V++ QV+IRAR L
Sbjct: 4   ELVLDTAIRDWVLVPLSVVMVLIGVLRYFVAKLMRSPSASPSPDPKLVKEGQVVIRARNL 63

Query: 257 ERTGSIYL 280
            R  S Y+
Sbjct: 64  -RINSQYI 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,314,797
Number of Sequences: 37544
Number of extensions: 304685
Number of successful extensions: 715
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)