Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0160.Seq
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38127| Best HMM Match : DUF850 (HMM E-Value=3e-19)                  71   9e-13
SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.1  
SB_53691| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_46140| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_6376| Best HMM Match : 7tm_1 (HMM E-Value=5.2e-33)                  28   6.6  

>SB_38127| Best HMM Match : DUF850 (HMM E-Value=3e-19)
          Length = 141

 Score = 70.5 bits (165), Expect = 9e-13
 Identities = 31/49 (63%), Positives = 40/49 (81%)
 Frame = +2

Query: 80  MPELLLDPNIRFWVFLPIVIITFLVGIVRHYVSLILSSQKKIELIQVQD 226
           M EL+LDP IR WV LPIVIITFL+GI+RHY+S++L S+K ++L  V D
Sbjct: 1   MAELVLDPAIRLWVILPIVIITFLIGIIRHYLSILLHSKKDVDLQGVTD 49


>SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 462 PVNPSSDDNHR-QDICQITFQHVSHHAWICHRIL 364
           P++ SS  +HR   +C     H+ HH  +CH  L
Sbjct: 102 PLSSSSQSSHRYHPLCHHHHHHLHHHHHLCHHHL 135


>SB_53691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 13  IHILKNKINYLRHK*NIESAKPNARVTFRSKYPILGVSTHCHNYIFGWNC 162
           I + + +I++L+    +  AK   +V   +KY +   S    +Y+ GWNC
Sbjct: 270 IAVDEGRISHLKEAIEVLIAKRPIQVAKNNKY-VFAASMESMSYLKGWNC 318


>SB_46140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 748

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = +1

Query: 343 QKRAAASQNPMTDPGMMTDMLKGNLTNVLPMIVIGGWINWMFSGFLTTKVPFPLTRDSSR 522
           Q+R   ++ P  D     ++L+    N+   I+IG +I       +T+ V    T  +S 
Sbjct: 26  QRRRIRNEGPAIDLETRREILRSAKANITAGIIIGQFIILWVPCLVTSLVH---TFTTSE 82

Query: 523 CFSAALS*RIWDA 561
           C SA L  R+W A
Sbjct: 83  CLSAELR-RVWIA 94


>SB_6376| Best HMM Match : 7tm_1 (HMM E-Value=5.2e-33)
          Length = 304

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = +1

Query: 343 QKRAAASQNPMTDPGMMTDMLKGNLTNVLPMIVIGGWINWMFSGFLTTKVPFPLTRDSSR 522
           Q+R   ++ P  D     ++L+    N+   I+IG +I       +T+ V    T  +S 
Sbjct: 191 QRRRIRNEGPAIDLETRREILRSAKANITAGIIIGQFIILWVPCLVTSLVH---TFTTSE 247

Query: 523 CFSAALS*RIWDA 561
           C SA L  R+W A
Sbjct: 248 CLSAELR-RVWIA 259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,871,380
Number of Sequences: 59808
Number of extensions: 351551
Number of successful extensions: 732
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)