Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0160.Seq
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-7|CAB60598.1|  234|Caenorhabditis elegans Hypothetical ...   130   7e-31
AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase ...    28   5.7  
AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered cut...    28   5.7  
U67956-5|AAB07694.1|  724|Caenorhabditis elegans Mechanosensory ...    27   10.0 
L25312-1|AAA17404.1|  724|Caenorhabditis elegans mec-10 degeneri...    27   10.0 

>AL132865-7|CAB60598.1|  234|Caenorhabditis elegans Hypothetical
           protein Y62E10A.10 protein.
          Length = 234

 Score =  130 bits (314), Expect = 7e-31
 Identities = 61/111 (54%), Positives = 76/111 (68%), Gaps = 1/111 (0%)
 Frame = +1

Query: 256 RENGKYLPRQSFAMRRHWFNNEETGYF-KVQKRAAASQNPMTDPGMMTDMLKGNLTNVLP 432
           RENG++LP+ SF  RR +   EETGY  K Q+R A   NPM DP  MT+MLKGN+ N++P
Sbjct: 60  RENGRFLPKTSFNARRQYLCAEETGYLSKAQQRPAKGPNPM-DPSQMTEMLKGNMMNMIP 118

Query: 433 MIVIGGWINWMFSGFLTTKVPFPLTRDSSRCFSAALS*RIWDASWGSSASW 585
           MIV+GGWINW FSGF+TT+VPFPLT          +     D++W SSASW
Sbjct: 119 MIVVGGWINWTFSGFVTTRVPFPLTLKFKAMLQRGVDLVSLDSAWVSSASW 169



 Score = 88.6 bits (210), Expect = 3e-18
 Identities = 39/63 (61%), Positives = 50/63 (79%)
 Frame = +2

Query: 80  MPELLLDPNIRFWVFLPIVIITFLVGIVRHYVSLILSSQKKIELIQVQDSQVMIRARLLE 259
           M +LLLDP IR WVFLPIV+ITF +GI+RHYVSL+L ++KK+EL  + D Q ++RARLL 
Sbjct: 1   MTDLLLDPAIRTWVFLPIVVITFFIGILRHYVSLLLMNKKKVELENIADGQYLLRARLLR 60

Query: 260 RTG 268
             G
Sbjct: 61  ENG 63


>AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase
            protein.
          Length = 1497

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +2

Query: 68   LLSQMPELLLDPNIRFWVFLPIV--IITFLVGIVRHYVSL 181
            LL  +P+LL  P   ++V  PIV  +I  ++G++++Y  L
Sbjct: 1177 LLHGLPKLLDSPKFGYYVVGPIVLFVIDRIIGLMQYYKKL 1216


>AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered cuticle
            protein 3 protein.
          Length = 1497

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +2

Query: 68   LLSQMPELLLDPNIRFWVFLPIV--IITFLVGIVRHYVSL 181
            LL  +P+LL  P   ++V  PIV  +I  ++G++++Y  L
Sbjct: 1177 LLHGLPKLLDSPKFGYYVVGPIVLFVIDRIIGLMQYYKKL 1216


>U67956-5|AAB07694.1|  724|Caenorhabditis elegans Mechanosensory
           abnormality protein10 protein.
          Length = 724

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 486 GCKKTTEHPVNPSSDDNHRQDICQITFQHVSHHAWICHR 370
           G  +  E      S DN   D+C   F   ++ AW CHR
Sbjct: 252 GSNECEERSTEKPSGDN---DMCICAFDRQTNDAWPCHR 287


>L25312-1|AAA17404.1|  724|Caenorhabditis elegans mec-10 degenerin
           protein.
          Length = 724

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 486 GCKKTTEHPVNPSSDDNHRQDICQITFQHVSHHAWICHR 370
           G  +  E      S DN   D+C   F   ++ AW CHR
Sbjct: 252 GSNECEERSTEKPSGDN---DMCICAFDRQTNDAWPCHR 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,413,878
Number of Sequences: 27780
Number of extensions: 275933
Number of successful extensions: 685
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)