Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0160.Seq
         (590 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12590.1 68417.m01985 expressed protein contains Pfam PF05863...    85   3e-17
At1g27120.1 68414.m03305 galactosyltransferase family protein co...    29   3.1  
At1g73110.1 68414.m08453 ribulose bisphosphate carboxylase/oxyge...    28   4.1  
At3g55870.1 68416.m06208 anthranilate synthase, alpha subunit, p...    28   5.4  
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    28   5.4  
At3g48730.1 68416.m05321 glutamate-1-semialdehyde 2,1-aminomutas...    27   7.1  
At2g42830.2 68415.m05303 agamous-like MADS box protein AGL5 / fl...    27   7.1  
At5g28760.1 68418.m03532 hypothetical protein contains Pfam prof...    27   9.4  
At3g03140.1 68416.m00310 expressed protein                             27   9.4  

>At4g12590.1 68417.m01985 expressed protein contains Pfam PF05863:
           Eukaryotic protein of unknown function (DUF850)
          Length = 246

 Score = 85.0 bits (201), Expect = 3e-17
 Identities = 43/109 (39%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
 Frame = +1

Query: 271 YLPRQSFAMRRHWFNNEETGYFKVQKRAAASQNPM----TDPGMMTDMLKGNLTNVLPMI 438
           ++P +SF  RR +F+NEE G   V K  A  QNP     +DP M  DM+K NL+ ++P  
Sbjct: 66  FIPPKSFRARRFYFSNEENGLLHVPKGEA--QNPQAAMFSDPNMAMDMMKKNLSMIIPQT 123

Query: 439 VIGGWINWMFSGFLTTKVPFPLTRDSSRCFSAALS*RIWDASWGSSASW 585
           +   W+N+ FSGF+  K+PFPLT+         +     D S+ SS SW
Sbjct: 124 LTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 172



 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 23/58 (39%), Positives = 40/58 (68%)
 Frame = +2

Query: 86  ELLLDPNIRFWVFLPIVIITFLVGIVRHYVSLILSSQKKIELIQVQDSQVMIRARLLE 259
           +L+LD  IR WV +P+ ++  L+GI+R++VS ++ S    +   V++ QV+IRAR L+
Sbjct: 4   DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSTPTPDAKMVKEGQVVIRARNLK 61


>At1g27120.1 68414.m03305 galactosyltransferase family protein
           contains Pfam profile:PF01762 galactosyltransferase
          Length = 673

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +2

Query: 194 QKKIELIQVQDSQVMIRARLLERTGSIYLGSHLLCVAT 307
           +K  +++ V +S+ + R+R+L     + LGSH+  VAT
Sbjct: 167 EKCPDMVSVSESEFVNRSRILVLPCGLTLGSHITVVAT 204


>At1g73110.1 68414.m08453 ribulose bisphosphate
           carboxylase/oxygenase activase, putative / RuBisCO
           activase, putative similar to ribulose bisphosphate
           carboxylase/oxygenase activase, chloroplast precursor
           (RuBisCO activase, RA) [Oryza sativa] SWISS-PROT:P93431
          Length = 432

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +1

Query: 220 SR*SSNDTCEVARENGKYLPRQSFAMRRHWFNNEETGYFKVQKRAAASQNPMTDPGMMTD 399
           S+ SSND  +VA ++G   PR+  + +  W   +  G   + +  A S N     G  + 
Sbjct: 41  SKPSSNDGGKVANDDGGAKPRKKLSEQSSWEVKDSEGKDYLYRLGAESDNVNIAVGARSG 100

Query: 400 ML 405
           M+
Sbjct: 101 MI 102


>At3g55870.1 68416.m06208 anthranilate synthase, alpha subunit,
           putative similar to anthranilate synthase alpha subunit,
           Ruta graveolens, EMBL:RGANTSYNB [gi:960291], Arabidopsis
           thaliana [SP|P32068]
          Length = 492

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 331 YFKVQKRAAASQNPMTDPGMMTDMLKGNLTNVLPMIVIGGWINW 462
           + K  K     ++PM  P  +++  K  L + LP +  GGW+ +
Sbjct: 44  HVKGTKTTEEVEDPMMIPRRISETWKPQLIDDLPDVFCGGWVGY 87


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 259 ENGKYLPRQSFAMRRHWFNNEETGYFKVQKRAAASQNPM 375
           ENG++LP        ++  N  TGYF   ++     +P+
Sbjct: 238 ENGQWLPENGVGYSNYYPGNANTGYFGYPEQRREPPSPV 276


>At3g48730.1 68416.m05321 glutamate-1-semialdehyde 2,1-aminomutase 2
           (GSA 2) / glutamate-1-semialdehyde aminotransferase 2
           (GSA-AT 2) identical to GSA2 [SP|Q42522]
          Length = 472

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 307 SGDA*QMTA*VDTSRSLEQPRTYHYL 230
           SG+   MTA + T + L QP TY YL
Sbjct: 346 SGNPLAMTAGIHTLKRLSQPGTYEYL 371


>At2g42830.2 68415.m05303 agamous-like MADS box protein AGL5 /
           floral homeodomain transcription factor (AGL5) identical
           to SP|P29385 Agamous-like MADS box protein AGL5
           {Arabidopsis thaliana}
          Length = 248

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/25 (36%), Positives = 20/25 (80%)
 Frame = +2

Query: 194 QKKIELIQVQDSQVMIRARLLERTG 268
           QK+++ I++Q+  + +R+++ ERTG
Sbjct: 169 QKRVKEIELQNDNMYLRSKITERTG 193


>At5g28760.1 68418.m03532 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 520

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -3

Query: 534 RAEASA*IASQRKRYFGCKKTTEHPVNPSS---DDNHRQDICQITFQHVSHH 388
           R E    +  +RKR    KK TE P+ P       +  Q +C++  + + HH
Sbjct: 32  RKEMEEEVVKKRKRKKEWKKKTEQPMQPQRMFFGPSEYQKMCKVGTRCIVHH 83


>At3g03140.1 68416.m00310 expressed protein
          Length = 769

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 256 RENGKYLPRQSFAMRRHWFNNEETGYFKVQKRAAASQNPM 375
           + N + LPR+S   R+   N  E G +   KR A  Q PM
Sbjct: 393 KRNFRTLPRRSARKRKLHRNRLEDGRYCEYKRRAFGQKPM 432


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,649,173
Number of Sequences: 28952
Number of extensions: 257371
Number of successful extensions: 650
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)