Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0159.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ...    66   5e-12
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    29   0.48 
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    27   2.6  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    27   2.6  
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    27   2.6  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    26   4.5  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    26   6.0  

>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 66.1 bits (154), Expect = 5e-12
 Identities = 30/55 (54%), Positives = 37/55 (67%)
 Frame = +3

Query: 495 FSADSRFKPMLQRGVELAYLDASWGSSASWEFLNVFGLRTIYALVLGENNAADQS 659
           F    RFK + Q GV    LD  W SS SW FLN+FGL+++YAL+LGENNAA  +
Sbjct: 147 FPLTLRFKSIFQSGVATQDLDVQWVSSISWYFLNLFGLKSVYALLLGENNAASNA 201



 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 25/60 (41%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
 Frame = +2

Query: 80  MPELLLDPNIRFWVFLPIVIITFLVGIVRHYVSLIL-SSQKKIELIQVQDSQVMIRARLL 256
           M +LLLDP +R WV LPI+ +  L+GI+RH  +++L SS KK+   ++++ +++ RA  L
Sbjct: 1   MQKLLLDPALRNWVLLPIMFVMILIGILRHNATILLQSSPKKLSKEEIREQRLLQRAYAL 60



 Score = 52.0 bits (119), Expect = 8e-08
 Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
 Frame = +1

Query: 331 YFK-VQKRAAASQNPMTDP----GMMTDMLKGNLTNVLPMIVIGGWINWMFSGFLTTKVP 495
           Y K V   A  + NP+ D     G+M  M KGN+  V+P  +I  WIN  FSGF+  K+P
Sbjct: 88  YLKPVDPNAPKAANPLMDDKTLEGLMESM-KGNMLMVVPQTIIMTWINEFFSGFILLKLP 146

Query: 496 FPLTRDSSRCFSAALS 543
           FPLT      F + ++
Sbjct: 147 FPLTLRFKSIFQSGVA 162


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 23/58 (39%), Positives = 35/58 (60%)
 Frame = +2

Query: 29   IKSITYDISEI*NLLSQMPELLLDPNIRFWVFLPIVIITFLVGIVRHYVSLILSSQKK 202
            + + T DI ++  LLS++P  LLD  + F V+L  V  T +  IV+  ++ ILS QKK
Sbjct: 1156 VNTNTADIDDLYRLLSKIPTNLLDLPM-FQVYLGCV-DTLIQTIVKQ-IAQILSKQKK 1210


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +1

Query: 190 LSKKD*TYSGSR*SSNDTCEVARENGKYLPRQSFAMRRHWFNNEETGYFKVQKR 351
           LS KD +   SR  S DT EV ++NG     Q  ++R    +NE+   ++++ R
Sbjct: 323 LSLKDYSAVVSRVISTDTLEVRKDNGVECRIQLSSIRHPRPSNEKEAPYQLEAR 376


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 116 WVFLPIV-IITFLVGIVRHYVSLILSSQKKIELIQVQDSQVMIRARLLERTGSI-YLGSH 289
           W+ LPI  I+  LVGI++HY++    S     L +V  S  +I + L    GSI Y G  
Sbjct: 460 WIDLPIAFILGCLVGILQHYIA--PRSTMYNSLFEVTGS--IITSFLSRAFGSIRYSGGR 515

Query: 290 LLC 298
             C
Sbjct: 516 RFC 518


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 380 SVIGFCEAAALFCTLK*PVSSLLNQWRRIANDCLGRYFPFS 258
           SV+GFCE A        P S  +  W  +    LG  F ++
Sbjct: 283 SVVGFCEGAVAGLVAITPGSGFVPPWAAVVIGALGAVFCYA 323


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 22/94 (23%), Positives = 39/94 (41%)
 Frame = +2

Query: 77  QMPELLLDPNIRFWVFLPIVIITFLVGIVRHYVSLILSSQKKIELIQVQDSQVMIRARLL 256
           + P  +L  ++  + + P  +   L   V HYV+    +   ++ + VQ     IR  L+
Sbjct: 167 EFPLTVLIHHVMLYQYYPKSLQEALWAAVEHYVNNSGEAYSTVQKLAVQKKIGNIRMYLV 226

Query: 257 ERTGSIYLGSHLLCVATGLTMRKQAISKYRKELL 358
                  LGS   C+    +   Q+  + RK LL
Sbjct: 227 NPRDIFALGSTCNCIVVS-SSNFQSYVQLRKPLL 259


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 492 YFGCKKTTEHPVNPSSDDNHRQDIC 418
           Y G  K T H  NP S D   Q+ C
Sbjct: 124 YLGGDKCTVHVTNPCSPDEKNQNDC 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,027,788
Number of Sequences: 5004
Number of extensions: 63639
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)