Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0159.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38127| Best HMM Match : DUF850 (HMM E-Value=3e-19)                  71   1e-12
SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_53691| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_17166| Best HMM Match : VWA (HMM E-Value=4.9e-30)                   28   6.3  
SB_46140| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_6376| Best HMM Match : 7tm_1 (HMM E-Value=5.2e-33)                  28   8.4  

>SB_38127| Best HMM Match : DUF850 (HMM E-Value=3e-19)
          Length = 141

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 31/49 (63%), Positives = 40/49 (81%)
 Frame = +2

Query: 80  MPELLLDPNIRFWVFLPIVIITFLVGIVRHYVSLILSSQKKIELIQVQD 226
           M EL+LDP IR WV LPIVIITFL+GI+RHY+S++L S+K ++L  V D
Sbjct: 1   MAELVLDPAIRLWVILPIVIITFLIGIIRHYLSILLHSKKDVDLQGVTD 49



 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 28/37 (75%), Positives = 34/37 (91%)
 Frame = +3

Query: 570 SSASWEFLNVFGLRTIYALVLGENNAADQSKIMQEQM 680
           SS SW F+NVFGLR++YALVLGENNAAD +++MQEQM
Sbjct: 52  SSVSWYFINVFGLRSMYALVLGENNAADPTRMMQEQM 88


>SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 462 PVNPSSDDNHR-QDICQITFQHVSHHAWICHRIL 364
           P++ SS  +HR   +C     H+ HH  +CH  L
Sbjct: 102 PLSSSSQSSHRYHPLCHHHHHHLHHHHHLCHHHL 135


>SB_53691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 13  IHILKNKINYLRHK*NIESAKPNARVTFRSKYPILGVSTHCHNYIFGWNC 162
           I + + +I++L+    +  AK   +V   +KY +   S    +Y+ GWNC
Sbjct: 270 IAVDEGRISHLKEAIEVLIAKRPIQVAKNNKY-VFAASMESMSYLKGWNC 318


>SB_17166| Best HMM Match : VWA (HMM E-Value=4.9e-30)
          Length = 295

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = -3

Query: 642 YFLPVQ-VHISSSNRIH*GIPMKLMTPMKHPDTLAQRRAEASA*IASQRKRYFGCKKTTE 466
           YFL    VHI+S +R        L  PM +P  L Q  +      A +   Y   +    
Sbjct: 18  YFLDRDDVHIASIHRGRYANLGYLYNPMNYP--LRQASSNIKVPYAFRNDHYNPLRSRIH 75

Query: 465 HPVNPSSDDNHRQ 427
           H V+P SDD + Q
Sbjct: 76  HNVHPYSDDYYNQ 88


>SB_46140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 748

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +1

Query: 343 QKRAAASQNPMTDPGMMTDMLKGNLTNVLPMIVIGGWINWMFSGFLTTKVPFPLTRDSSR 522
           Q+R   ++ P  D     ++L+    N+   I+IG +I       +T+ V    T  +S 
Sbjct: 26  QRRRIRNEGPAIDLETRREILRSAKANITAGIIIGQFIILWVPCLVTSLVH---TFTTSE 82

Query: 523 CFSAALS*RIWM 558
           C SA L  R+W+
Sbjct: 83  CLSAELR-RVWI 93


>SB_6376| Best HMM Match : 7tm_1 (HMM E-Value=5.2e-33)
          Length = 304

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +1

Query: 343 QKRAAASQNPMTDPGMMTDMLKGNLTNVLPMIVIGGWINWMFSGFLTTKVPFPLTRDSSR 522
           Q+R   ++ P  D     ++L+    N+   I+IG +I       +T+ V    T  +S 
Sbjct: 191 QRRRIRNEGPAIDLETRREILRSAKANITAGIIIGQFIILWVPCLVTSLVH---TFTTSE 247

Query: 523 CFSAALS*RIWM 558
           C SA L  R+W+
Sbjct: 248 CLSAELR-RVWI 258


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,997,649
Number of Sequences: 59808
Number of extensions: 454901
Number of successful extensions: 940
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)