Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0159.Seq
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   6.4  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   8.5  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   8.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   8.5  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   8.5  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   8.5  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   8.5  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   8.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   8.5  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 631 STSAYIVLKPNTLRNSHEADDPHEASRYASS 539
           STS+Y    PN+     E   P   + Y SS
Sbjct: 137 STSSYDPYSPNSKIGRDELSQPGSLNGYGSS 167


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 559 LHGGHQLHGNSS 594
           LHG H LHG SS
Sbjct: 137 LHGLHGLHGLSS 148


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 163 HNSNQKCNYDN 131
           HN+N K NY+N
Sbjct: 90  HNNNYKYNYNN 100


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 163 HNSNQKCNYDN 131
           HN+N K NY+N
Sbjct: 90  HNNNYKYNYNN 100


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 163 HNSNQKCNYDN 131
           HN+N K NY+N
Sbjct: 91  HNNNYKYNYNN 101


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 163 HNSNQKCNYDN 131
           HN+N K NY+N
Sbjct: 91  HNNNYKYNYNN 101


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 163 HNSNQKCNYDN 131
           HN+N K NY+N
Sbjct: 91  HNNNYKYNYNN 101


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 163 HNSNQKCNYDN 131
           HN+N K NY+N
Sbjct: 91  HNNNYKYNYNN 101


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 616 IVLKPNTLRNSHEADDPHEA 557
           I+L     +N HE+DD HE+
Sbjct: 43  ILLAKIEKQNLHESDDLHES 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,021
Number of Sequences: 438
Number of extensions: 4499
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)