Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0156.Seq
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    29   0.44 
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    28   0.76 
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    27   2.3  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   5.4  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   5.4  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   7.1  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    25   7.1  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    25   7.1  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   9.4  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   9.4  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 138  NFIQLKQKERGKCRINVFGHALIIGIYVARGHQQSAKCMVRHCDRLVF 281
            N I LKQ +R +  I V    L+      + H+ S  C  RH DRL++
Sbjct: 1087 NIIDLKQPKRREISIEVLYQILL------QNHEFSESCYKRHFDRLIW 1128


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 167 RKMQDKCLWTCPDYRHLCRPWTSTKCKVH 253
           R++++KC +   D+R     WT  K ++H
Sbjct: 215 REIKEKCCYVASDFRSEIESWTEHKPQIH 243


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 326 KLEATTASVEYMERRKHQPVAMSHHALCTLLMSTGDINAYNQGMSKDI 183
           K E  T   EY   +  QP   S+     + ++  D++  NQG SKDI
Sbjct: 137 KWEKRTIKAEYESSKLVQPEQKSYEEFY-MAVNPLDLSGSNQGKSKDI 183


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 314  TTASVEYMERRKHQPVAMSHHALCTLLMSTGDINAYNQGMSKDIY 180
            T   VEY+ RR HQ    +H     + + TGD++   + M+ D +
Sbjct: 1424 TKKDVEYIHRRLHQSDLFAH---THVTIYTGDVSDEERQMNFDAF 1465


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 314  TTASVEYMERRKHQPVAMSHHALCTLLMSTGDINAYNQGMSKDIY 180
            T   VEY+ RR HQ    +H     + + TGD++   + M+ D +
Sbjct: 1424 TKKDVEYIHRRLHQSDLFAH---THVTIYTGDVSDEERQMNFDAF 1465


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 143 YTIKTKRKRKMQDKCLWTCPDYRHLCRP 226
           YTI T   + +    +++CP Y H C P
Sbjct: 879 YTIGTSNAKDVSH-FVFSCPYYTHFCHP 905


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 338 ANSRKLEATTASVEYMERRKHQPVAMSHHA 249
           AN  +L++ +AS EY +RRK +    + HA
Sbjct: 346 ANPSELQSYSASHEYDKRRKREQRDANSHA 375


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 335 NSRKLEATTASVEYMERRKHQPVAMSHH 252
           N RKL ++ A ++ + +R H P+A S+H
Sbjct: 573 NVRKLISSPAIIQLVSKRSH-PMAFSNH 599


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 3   FFYLFITFNFMCIFFTFSLKVNNIIKSNKYVTFHNTFTLNRFIFYNF 143
           F++L +   F+C FF F   V  ++KS          +L   +FY+F
Sbjct: 59  FWFLSLVRGFVCFFFMFPYFV--MLKSRMSTQKVTKQSLGAQLFYDF 103


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 453 GGRAHSPPGVKWLLKP 500
           GG  H P  V WLL+P
Sbjct: 235 GGPLHDPNTVMWLLRP 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,369
Number of Sequences: 5004
Number of extensions: 48576
Number of successful extensions: 126
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)