Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0156.Seq
         (534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0917 - 22574472-22574558,22574756-22574821,22574848-225748...    29   3.1  
02_04_0276 + 21491150-21492761,21492891-21492947,21493817-214938...    29   3.1  
04_01_0036 + 436592-437572                                             28   4.1  
08_02_1618 + 28280414-28281193                                         28   5.4  
05_04_0410 + 21053952-21054014,21054127-21054160,21054267-21054448     28   5.4  
01_05_0386 - 21683909-21685334,21685513-21685541                       27   7.2  

>07_03_0917 -
           22574472-22574558,22574756-22574821,22574848-22574886,
           22574978-22575026,22575492-22575559,22575650-22575695,
           22575773-22575866,22575956-22576018,22576436-22576558,
           22577143-22577176,22577489-22577551,22577678-22577785,
           22577914-22577976,22578322-22578378
          Length = 319

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 1   FFFIYL*HLILCVFSLHSP 57
           FF +YL H++ CVFS  +P
Sbjct: 212 FFLVYLFHILFCVFSAVAP 230


>02_04_0276 +
           21491150-21492761,21492891-21492947,21493817-21493870,
           21493994-21494022
          Length = 583

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = -2

Query: 470 TMSSSTHLRNLKKT*TLFHRLNRRVGSLRRPSGGNSQPV*RLMEANSRKLEA 315
           + SS   LR+L +   L   L R VGS RRP  G    + + + A+ R  EA
Sbjct: 65  SFSSGDRLRSLVRRGELDEAL-RLVGSARRPDAGTCAALIKKLSASGRTAEA 115


>04_01_0036 + 436592-437572
          Length = 326

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 338 ANSRKLEATTASVEYMERRKHQPVAMSHHALCTLLMSTGDI 216
           A +R+LEA    V Y  RR+ + VA ++    T L ++ D+
Sbjct: 168 AIARRLEAFGCVVSYHNRRRREDVAYAYFPTATDLAASSDV 208


>08_02_1618 + 28280414-28281193
          Length = 259

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 462 LVHPFKEFKKNLNPISPTEPASWVPPASQ 376
           L HPF + KK   PI  T+ AS + PAS+
Sbjct: 222 LPHPFNQTKKWDRPILQTKHASGIIPASK 250


>05_04_0410 + 21053952-21054014,21054127-21054160,21054267-21054448
          Length = 92

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 285 PETPACRNVSPCTLHFVDVHGRHKC 211
           P T    NV PC  +    +GRHKC
Sbjct: 67  PGTSGNENVCPCYANMTTHNGRHKC 91


>01_05_0386 - 21683909-21685334,21685513-21685541
          Length = 484

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
 Frame = -2

Query: 413 RLNRRVGSLRR--PSGGNSQPV*RLMEANS--RKLEATTASVEYMERRKHQPVAMSHHAL 246
           R++ R+  L++  P G        L EA +  R L++    ++ ++RR +   AMS +  
Sbjct: 385 RISERLRVLQKLVPGGAKMDTASMLDEAANYLRFLKSQIRELQTLDRRNYPNAAMSINTA 444

Query: 245 CTLLMSTGDINAYNQGMSKDIYPAFS 168
               M+T     YN   S    PAF+
Sbjct: 445 AATTMATSSSPTYNN--SNAAMPAFA 468


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,478,812
Number of Sequences: 37544
Number of extensions: 327967
Number of successful extensions: 781
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)