Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0156.Seq
         (534 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45569| Best HMM Match : DUF1692 (HMM E-Value=4)                     29   2.4  
SB_11326| Best HMM Match : Ank (HMM E-Value=2.3e-10)                   29   2.4  
SB_6911| Best HMM Match : Ank (HMM E-Value=0)                          29   2.4  
SB_40918| Best HMM Match : DMAP_binding (HMM E-Value=0.48)             29   2.4  

>SB_45569| Best HMM Match : DUF1692 (HMM E-Value=4)
          Length = 135

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -2

Query: 251 ALCTLLMSTGDINAYNQGMSKDIYPAFSSFFL 156
           ALC   M  G     N G S D YPAF   F+
Sbjct: 85  ALCIFTMEAGSHLVVNDGYSADSYPAFYPRFV 116


>SB_11326| Best HMM Match : Ank (HMM E-Value=2.3e-10)
          Length = 248

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +3

Query: 219 VARGHQQSAKCMVRHCDRLVFPAFHILY*GGRGLKLPTISF---HKPSHRLRVTAAGTP 386
           +++ HQQ AK  V+ C RL+   + +L+   +G  + T+ F   HK S      A  TP
Sbjct: 140 LSKKHQQRAKNPVKDCKRLMC-GYSLLHAAAQGGHVETVKFLLNHKLSKDAESGAGNTP 197


>SB_6911| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1961

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +3

Query: 219  VARGHQQSAKCMVRHCDRLVFPAFHILY*GGRGLKLPTISF---HKPSHRLRVTAAGTP 386
            +++ HQQ AK  V+ C RL+   + +L+   +G  + T+ F   HK S      A  TP
Sbjct: 869  LSKKHQQRAKNPVKDCKRLMC-GYSLLHAAAQGGHVETVKFLLNHKLSKDAESGAGNTP 926


>SB_40918| Best HMM Match : DMAP_binding (HMM E-Value=0.48)
          Length = 366

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 21/55 (38%), Positives = 21/55 (38%)
 Frame = +2

Query: 251 HGETLRQAGVSGVPYTLLRRSWPQASYY*LP*AFTPVESYRRWDAGGTQLAGSVG 415
           HGET RQA VSG  Y       P   Y  L     P   YR  D  G  L    G
Sbjct: 165 HGETYRQASVSGTDYPT-----PPGDYPTLGPRRAPQSRYRFLDTDGALLQPPAG 214


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,608,765
Number of Sequences: 59808
Number of extensions: 367406
Number of successful extensions: 896
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)