Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0156.Seq
         (534 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L34357-1|AAA58496.1|  442|Homo sapiens GATA-4 protein.                 33   0.84 
D78260-1|BAA11334.1|  439|Homo sapiens GATA-4 transcription fact...    33   0.84 
BC105108-1|AAI05109.1|  442|Homo sapiens GATA binding protein 4 ...    33   0.84 
BC101580-1|AAI01581.1|  442|Homo sapiens GATA binding protein 4 ...    33   0.84 
AY740706-1|AAW51922.1|  442|Homo sapiens GATA binding protein 4 ...    33   0.84 

>L34357-1|AAA58496.1|  442|Homo sapiens GATA-4 protein.
          Length = 442

 Score = 32.7 bits (71), Expect = 0.84
 Identities = 24/75 (32%), Positives = 35/75 (46%)
 Frame = -2

Query: 380 PSGGNSQPV*RLMEANSRKLEATTASVEYMERRKHQPVAMSHHALCTLLMSTGDINAYNQ 201
           PSG  S P      A+S    ATT+S E M   K +P   SH+   + +  T  ++A + 
Sbjct: 334 PSGSESLPP--ASGASSNSSNATTSSSEEMRPIKTEPGLSSHYGHSSSVSQTFSVSAMS- 390

Query: 200 GMSKDIYPAFSSFFL 156
           G    I+P  S+  L
Sbjct: 391 GHGPSIHPVLSALKL 405


>D78260-1|BAA11334.1|  439|Homo sapiens GATA-4 transcription factor
           protein.
          Length = 439

 Score = 32.7 bits (71), Expect = 0.84
 Identities = 24/75 (32%), Positives = 35/75 (46%)
 Frame = -2

Query: 380 PSGGNSQPV*RLMEANSRKLEATTASVEYMERRKHQPVAMSHHALCTLLMSTGDINAYNQ 201
           PSG  S P      A+S    ATT+S E M   K +P   SH+   + +  T  ++A + 
Sbjct: 331 PSGSESLPP--ASGASSNSSNATTSSSEEMRPIKTEPGLSSHYGHSSSVSQTFSVSAMS- 387

Query: 200 GMSKDIYPAFSSFFL 156
           G    I+P  S+  L
Sbjct: 388 GHGPSIHPVLSALKL 402


>BC105108-1|AAI05109.1|  442|Homo sapiens GATA binding protein 4
           protein.
          Length = 442

 Score = 32.7 bits (71), Expect = 0.84
 Identities = 24/75 (32%), Positives = 35/75 (46%)
 Frame = -2

Query: 380 PSGGNSQPV*RLMEANSRKLEATTASVEYMERRKHQPVAMSHHALCTLLMSTGDINAYNQ 201
           PSG  S P      A+S    ATT+S E M   K +P   SH+   + +  T  ++A + 
Sbjct: 334 PSGSESLPP--ASGASSNSSNATTSSSEEMRPIKTEPGLSSHYGHSSSVSQTFSVSAMS- 390

Query: 200 GMSKDIYPAFSSFFL 156
           G    I+P  S+  L
Sbjct: 391 GHGPSIHPVLSALKL 405


>BC101580-1|AAI01581.1|  442|Homo sapiens GATA binding protein 4
           protein.
          Length = 442

 Score = 32.7 bits (71), Expect = 0.84
 Identities = 24/75 (32%), Positives = 35/75 (46%)
 Frame = -2

Query: 380 PSGGNSQPV*RLMEANSRKLEATTASVEYMERRKHQPVAMSHHALCTLLMSTGDINAYNQ 201
           PSG  S P      A+S    ATT+S E M   K +P   SH+   + +  T  ++A + 
Sbjct: 334 PSGSESLPP--ASGASSNSSNATTSSSEEMRPIKTEPGLSSHYGHSSSVSQTFSVSAMS- 390

Query: 200 GMSKDIYPAFSSFFL 156
           G    I+P  S+  L
Sbjct: 391 GHGPSIHPVLSALKL 405


>AY740706-1|AAW51922.1|  442|Homo sapiens GATA binding protein 4
           protein.
          Length = 442

 Score = 32.7 bits (71), Expect = 0.84
 Identities = 24/75 (32%), Positives = 35/75 (46%)
 Frame = -2

Query: 380 PSGGNSQPV*RLMEANSRKLEATTASVEYMERRKHQPVAMSHHALCTLLMSTGDINAYNQ 201
           PSG  S P      A+S    ATT+S E M   K +P   SH+   + +  T  ++A + 
Sbjct: 334 PSGSESLPP--ASGASSNSSNATTSSSEEMRPIKTEPGLSSHYGHSSSVSQTFSVSAMS- 390

Query: 200 GMSKDIYPAFSSFFL 156
           G    I+P  S+  L
Sbjct: 391 GHGPSIHPVLSALKL 405


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,592,998
Number of Sequences: 237096
Number of extensions: 1918241
Number of successful extensions: 8221
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8221
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5216942984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)