Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0156.Seq
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical...    30   1.2  
Z67756-1|CAA91762.1|  157|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z81530-8|CAB04305.2|  329|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AC006674-2|AAF39941.2|  437|Caenorhabditis elegans Hypothetical ...    28   3.7  
AF025465-9|AAB71020.2|  136|Caenorhabditis elegans Hypothetical ...    28   4.8  
AF036698-3|AAB88354.1|  223|Caenorhabditis elegans Hypothetical ...    27   6.4  
AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical ...    27   6.4  
Z68303-12|CAA92644.2|  969|Caenorhabditis elegans Hypothetical p...    27   8.5  
Z68302-9|CAA92636.2|  969|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical
            protein Y69A2AR.31 protein.
          Length = 1219

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 356  PVESYRRWDAGGTQLAGSVGEIGFKFFLNSLNGWTSS*STWCEVVTEAH 502
            P+E     DA G ++   +G I  K+       W+   STWCE  +E H
Sbjct: 949  PMEGCNTKDANGREIFTHIGAIMRKYV-----DWSGRCSTWCECESEDH 992


>Z67756-1|CAA91762.1|  157|Caenorhabditis elegans Hypothetical
           protein R07A4.2 protein.
          Length = 157

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 9   YLFITFNFMCIFFTFSLKVNNIIKSNKYVTFH--NTFTLNRFIFY 137
           +  I FN  C+F T SL V N+  +  Y  F+  N + L R++ +
Sbjct: 59  FQLIVFNGFCLFLTLSLVVANV--TGAYDAFYKTNPYVLERYLVF 101


>Z81530-8|CAB04305.2|  329|Caenorhabditis elegans Hypothetical
           protein F36D1.3 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 9   YLFITFNFMCIFFTFSLKVNNIIKSNKYVTFHNTFTLNRFIFYNF 143
           Y  +  +F C  FTFS+ +  ++K  +++ F   F  NR I  N+
Sbjct: 199 YTHLLTSFFCTLFTFSINITMMVKV-RHILFQKKF-FNRNINKNY 241


>AC006674-2|AAF39941.2|  437|Caenorhabditis elegans Hypothetical
           protein K12H6.12 protein.
          Length = 437

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 306 LSRVYGTPETPACRNVSPCT 247
           LS +Y TP+TPA   +SP +
Sbjct: 101 LSSLYSTPDTPAAERISPAS 120


>AF025465-9|AAB71020.2|  136|Caenorhabditis elegans Hypothetical
           protein K02E7.11 protein.
          Length = 136

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = -3

Query: 178 LHFPLSFCFNCIKL*KINLFKVNVLWNVTYLFDFIILLTFRENVKKIHIKLNVI 17
           L F + F  N ++   + L  +N LW ++ +   I +L  ++   + HI  N +
Sbjct: 38  LDFDIEFVHNAVRPILLVLVTINFLWFISSISALICVLQDQKRYLRFHIYFNSV 91


>AF036698-3|AAB88354.1|  223|Caenorhabditis elegans Hypothetical
           protein B0273.1 protein.
          Length = 223

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 152 KTKRKRKMQDKCLWTCPDYRHLCRPWTSTKCKVHGET 262
           K   + K +D C +  P ++ LC P T  +   HGET
Sbjct: 184 KAPIEAKNEDPC-FMIPLFKALCNPKTKVETLAHGET 219


>AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical
            protein R193.2 protein.
          Length = 1853

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 398  LAGSVGEIGFKFFLNSLNGWTSS*STWCEVVTEAHTHY 511
            LAG++ +  F FFL   NGW    +T+  +++ A + Y
Sbjct: 1584 LAGAIEQEIF-FFLTEANGWRDDVTTYTIILSHADSFY 1620


>Z68303-12|CAA92644.2|  969|Caenorhabditis elegans Hypothetical
           protein ZK792.1a protein.
          Length = 969

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
 Frame = +3

Query: 6   FYLFITFNFMCIFFTFS-LKVNNIIKSNKY----VTFHNTFTLNR 125
           F LFI F F CIF  F  L  N +   N Y    V  H  F  NR
Sbjct: 519 FGLFILFGFFCIFNAFGFLGPNELTLRNSYYEKMVIEHCQFVENR 563


>Z68302-9|CAA92636.2|  969|Caenorhabditis elegans Hypothetical
           protein ZK792.1a protein.
          Length = 969

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
 Frame = +3

Query: 6   FYLFITFNFMCIFFTFS-LKVNNIIKSNKY----VTFHNTFTLNR 125
           F LFI F F CIF  F  L  N +   N Y    V  H  F  NR
Sbjct: 519 FGLFILFGFFCIFNAFGFLGPNELTLRNSYYEKMVIEHCQFVENR 563


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,272,316
Number of Sequences: 27780
Number of extensions: 290787
Number of successful extensions: 767
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)