Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0156.Seq
         (534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    25   0.49 
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    25   0.49 
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    25   0.49 
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    25   0.49 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   3.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   6.0  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               21   7.9  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 66  NNIIKSNKYVTFHNTFTLNRFIFYNFIQLKQ 158
           NN I +N Y   +N    N+ ++YN   ++Q
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINYIEQ 117


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 66  NNIIKSNKYVTFHNTFTLNRFIFYNFIQLKQ 158
           NN I +N Y   +N    N+ ++YN   ++Q
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINYIEQ 117


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 66  NNIIKSNKYVTFHNTFTLNRFIFYNFIQLKQ 158
           NN I +N Y   +N    N+ ++YN   ++Q
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINYIEQ 117


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 66  NNIIKSNKYVTFHNTFTLNRFIFYNFIQLKQ 158
           NN I +N Y   +N    N+ ++YN   ++Q
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINYIEQ 117


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 401 RVGSLRRPSGGNS 363
           RVGS RRPS  NS
Sbjct: 397 RVGSTRRPSRRNS 409


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 63  VNNIIKSNKYVTFHNTFTLNRF 128
           +N   +SN Y+ FH T +   F
Sbjct: 252 INKEARSNLYLPFHLTLSFRDF 273


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 369 TAAGTPEGPNSPVQSVK*GSS 431
           TAA TP  P+ PV S   G++
Sbjct: 47  TAAATPTPPSVPVGSAVAGTA 67


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 63  VNNIIKSNKYVTFHNTFTLNRF 128
           +N   +SN Y+ FH T +   F
Sbjct: 247 INKEARSNLYLPFHLTLSFRDF 268


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 183 LSCIFLFLFVLIV 145
           L CI+LFL V+++
Sbjct: 5   LRCIYLFLSVILI 17


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,685
Number of Sequences: 438
Number of extensions: 3365
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)