Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0156.Seq
         (534 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43680.2 68415.m05430 calmodulin-binding family protein simil...    27   7.9  
At2g43680.1 68415.m05429 calmodulin-binding family protein simil...    27   7.9  
At2g20840.1 68415.m02456 secretory carrier membrane protein (SCA...    27   7.9  

>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 669

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 179 DKCLWTCPDYRHLCRPWTSTKCKVHGETLRQAGVSGVPYTLLRR-SWP 319
           D  L +CP +     P  S K KV   +  +  V G P +  RR S+P
Sbjct: 557 DDSLTSCPPFPSYMAPTVSAKAKVRPNSNPKERVMGTPVSEKRRMSYP 604


>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 668

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 179 DKCLWTCPDYRHLCRPWTSTKCKVHGETLRQAGVSGVPYTLLRR-SWP 319
           D  L +CP +     P  S K KV   +  +  V G P +  RR S+P
Sbjct: 556 DDSLTSCPPFPSYMAPTVSAKAKVRPNSNPKERVMGTPVSEKRRMSYP 603


>At2g20840.1 68415.m02456 secretory carrier membrane protein (SCAMP)
           family protein contains Pfam domain, PF04144: SCAMP
           family
          Length = 282

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 1   FFFIYL*HLILCVFSLHSP 57
           FFF YL H+  CVF+  +P
Sbjct: 188 FFFTYLFHIAFCVFAAVAP 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,297,539
Number of Sequences: 28952
Number of extensions: 255387
Number of successful extensions: 606
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)