Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0154.Seq
         (680 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   4.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.0  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   9.3  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 558 IPYIQVLLNIWIPIT 514
           +P IQ  +NIW P+T
Sbjct: 522 MPRIQAEVNIWNPLT 536



 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 453 PSPPRVKSFPTAV 415
           P PPRV+SF   V
Sbjct: 734 PPPPRVESFAETV 746


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 453 PSPPRVKSFPTAVPV*PRQNL 391
           P PP + S P  V   P+Q L
Sbjct: 238 PHPPHLSSHPAIVTPGPKQEL 258


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 453 PSPPRVKSFPTAVPV*PRQNL 391
           P PP + S P  V   P+Q L
Sbjct: 130 PHPPHLSSHPAIVTPGPKQEL 150


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 540 LLNIWIPITTISGCRLLVINNTTSTIHQIPSP 445
           L N   PI T +    + INN TST     SP
Sbjct: 143 LKNKSAPILTKTSPTPVSINNNTSTSSSASSP 174


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,686
Number of Sequences: 336
Number of extensions: 3695
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)