Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0154.Seq
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)              87   9e-18
SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36)                   30   2.0  
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_25685| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  

>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
          Length = 1168

 Score = 87.4 bits (207), Expect = 9e-18
 Identities = 34/56 (60%), Positives = 46/56 (82%)
 Frame = +3

Query: 84  YRPLGPLVKCSYLPLEFLDCDEPIDHKGNHTARQATGHGCVKFGGVRYDQVEKAKV 251
           + P GPLV C YLPL+FLDC++P+D KGN +A++  G+GCVKFGG RYD+VE+ +V
Sbjct: 45  FDPRGPLVDCQYLPLDFLDCEQPLDLKGNSSAKKEQGYGCVKFGGSRYDEVERTRV 100



 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 263 LDGIECYGSRSFPRDGFPCVRYSGHY 340
           LDGIECYG R F  +  P   ++  Y
Sbjct: 105 LDGIECYGERRFLAEKCPVSSHALEY 130


>SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36)
          Length = 551

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 254 GKALDGIECYGSR-SFPRDGFPCVRYSG 334
           GK  +G EC+GSR S    G PCVR  G
Sbjct: 356 GKGGEGGECHGSRFSIAIQGSPCVRNKG 383


>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 587

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 462 HQIPSPPRVKSFPTAVPV*PRQNLSIPR 379
           + +PSPP++K  P  VPV  RQ   I R
Sbjct: 478 YPVPSPPQIKPMPYPVPVPVRQPPMIQR 505


>SB_25685| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 135 LDCDEPIDHKGNHTARQATGHGCVKFGGVR 224
           L CD P   KGN   + A    C++FG  R
Sbjct: 514 LPCDSPFTQKGNPYKKAALERLCIEFGLTR 543


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,332,004
Number of Sequences: 59808
Number of extensions: 434676
Number of successful extensions: 1103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)