Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0154.Seq
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14745-13|AAR25658.1|  210|Caenorhabditis elegans Hypothetical p...    84   1e-16
AF003740-5|AAL08031.1|  195|Caenorhabditis elegans Hypothetical ...    51   7e-07
AL161712-16|CAC35892.1|  329|Caenorhabditis elegans Hypothetical...    45   6e-05
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    28   5.4  
AC024753-11|AAF60461.1|  369|Caenorhabditis elegans Hypothetical...    28   5.4  
AL008869-2|CAC42315.1|  810|Caenorhabditis elegans Hypothetical ...    27   9.4  
AL008869-1|CAA15516.1|  808|Caenorhabditis elegans Hypothetical ...    27   9.4  
AB032749-1|BAA92158.1|  810|Caenorhabditis elegans EAT-20B protein.    27   9.4  
AB032748-1|BAA92157.1|  808|Caenorhabditis elegans EAT-20A protein.    27   9.4  

>L14745-13|AAR25658.1|  210|Caenorhabditis elegans Hypothetical
           protein C02F5.13 protein.
          Length = 210

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 38/83 (45%), Positives = 49/83 (59%)
 Frame = +2

Query: 257 KALDGIECYGSRSFPRDGFPCVRYSGHYFTTTLIYSILLGFLGMDRFCLGQXXXXXXXXX 436
           + L  IEC+G R+F +   PC+ Y+GHYF TTL+YSI LG + +DRFCLG          
Sbjct: 119 RVLPCIECHGPRTFTKST-PCIIYNGHYFLTTLLYSIFLGVVAVDRFCLGYSAMAVGKLM 177

Query: 437 XXXXXXIWWIVDVVLLITNSLHP 505
                 IWWIVD+ LL+   L P
Sbjct: 178 TLGGFGIWWIVDIFLLVLGVLGP 200



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
 Frame = +3

Query: 90  PLGPLVKCSYLPLEFLDCDEPIDHKG-NHTARQATGHG------CVKFGGVRYDQVEKAK 248
           PLGP+V+C +L   F+ C++P+   G   T +Q           C+K GG R + VE   
Sbjct: 56  PLGPVVECRFLENSFILCEDPVPLYGPGQTGQQPANESFRNEGKCLKMGGYRAEDVEFTN 115

Query: 249 VQAK 260
           V+ +
Sbjct: 116 VKCR 119


>AF003740-5|AAL08031.1|  195|Caenorhabditis elegans Hypothetical
           protein C41D11.9 protein.
          Length = 195

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 28/82 (34%), Positives = 40/82 (48%)
 Frame = +2

Query: 260 ALDGIECYGSRSFPRDGFPCVRYSGHYFTTTLIYSILLGFLGMDRFCLGQXXXXXXXXXX 439
           A   + C G R+F +   PC   SG+ +T T+I S++LG  G DRF LG           
Sbjct: 108 AHSSVICMGQRNFYKR-IPCNWSSGYSWTKTMILSVVLGGFGADRFYLGLWKSAIGKLFS 166

Query: 440 XXXXXIWWIVDVVLLITNSLHP 505
                +W +VDVVL+    + P
Sbjct: 167 FGGLGVWTLVDVVLIAVGYIKP 188


>AL161712-16|CAC35892.1|  329|Caenorhabditis elegans Hypothetical
           protein Y66D12A.21 protein.
          Length = 329

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
 Frame = +2

Query: 272 IECYGSRSFP---RDGFPCVRYSGHY-FTTTLIYSILLGFLGMDRFCLGQXXXXXXXXXX 439
           I+C G   F    R       Y  H  +TTT++ SI LGF G+DR  LG           
Sbjct: 63  IKCVGKDQFGIFNRTVPSACHYGAHVSYTTTVLLSIFLGFFGIDRIYLGYYALGLIKMFS 122

Query: 440 XXXXXIWWIVDVVLLITNSLHP 505
                ++W+VD++L+    L P
Sbjct: 123 LGGLFVFWLVDIILISLQLLGP 144


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/82 (24%), Positives = 37/82 (45%)
 Frame = -1

Query: 479  TLHQRSTKYQALLGSKVSPQLFLFDQDKIYPYLGILTRCYKSRWS*SNVQSIAHTGNRHA 300
            TL+Q        + ++   QL ++D+ K  PY   +T C    ++  NV  +A  G +  
Sbjct: 1520 TLNQDPVAIFGCVPTQFCRQLEMYDECKPLPYDTTVTGCCCDNYNNCNV-DLAGYGGKIN 1578

Query: 299  ESFDCHNIQFHPRLCLNFSFLN 234
             S    N + +P  C +  ++N
Sbjct: 1579 TSMPVTNFRDYPIACFSGLYVN 1600


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/82 (24%), Positives = 37/82 (45%)
 Frame = -1

Query: 479  TLHQRSTKYQALLGSKVSPQLFLFDQDKIYPYLGILTRCYKSRWS*SNVQSIAHTGNRHA 300
            TL+Q        + ++   QL ++D+ K  PY   +T C    ++  NV  +A  G +  
Sbjct: 1520 TLNQDPVAIFGCVPTQFCRQLEMYDECKPLPYDTTVTGCCCDNYNNCNV-DLAGYGGKIN 1578

Query: 299  ESFDCHNIQFHPRLCLNFSFLN 234
             S    N + +P  C +  ++N
Sbjct: 1579 TSMPVTNFRDYPIACFSGLYVN 1600


>AC024753-11|AAF60461.1|  369|Caenorhabditis elegans Hypothetical
           protein Y23H5B.1 protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = -3

Query: 552 YIQVLLNIWIPITTISGCRLLVIN-----NTTSTIHQIP 451
           Y+ + LNIWIP   + G     +N     N+  TIH +P
Sbjct: 194 YVPLALNIWIPPPFLEGSYTWDLNQESPYNSVGTIHSLP 232


>AL008869-2|CAC42315.1|  810|Caenorhabditis elegans Hypothetical
           protein H30A04.1b protein.
          Length = 810

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = -3

Query: 579 INFILDDIPYIQVL-LNIWIPITTISGCRLLVINNTTSTI---HQIPSPPRVKSFPTAVP 412
           IN +    P +++  L    P+T  +    L++   T T+   HQ+PS P V    T  P
Sbjct: 408 INNVTPSFPVLEISKLPTGAPVTFTATSTTLMVTQPTVTVSPTHQVPSEPFVGFTVTRAP 467

Query: 411 V*P 403
           + P
Sbjct: 468 LRP 470


>AL008869-1|CAA15516.1|  808|Caenorhabditis elegans Hypothetical
           protein H30A04.1a protein.
          Length = 808

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = -3

Query: 579 INFILDDIPYIQVL-LNIWIPITTISGCRLLVINNTTSTI---HQIPSPPRVKSFPTAVP 412
           IN +    P +++  L    P+T  +    L++   T T+   HQ+PS P V    T  P
Sbjct: 408 INNVTPSFPVLEISKLPTGAPVTFTATSTTLMVTQPTVTVSPTHQVPSEPFVGFTVTRAP 467

Query: 411 V*P 403
           + P
Sbjct: 468 LRP 470


>AB032749-1|BAA92158.1|  810|Caenorhabditis elegans EAT-20B protein.
          Length = 810

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = -3

Query: 579 INFILDDIPYIQVL-LNIWIPITTISGCRLLVINNTTSTI---HQIPSPPRVKSFPTAVP 412
           IN +    P +++  L    P+T  +    L++   T T+   HQ+PS P V    T  P
Sbjct: 408 INNVTPSFPVLEISKLPTGAPVTFTATSTTLMVTQPTVTVSPTHQVPSEPFVGFTVTRAP 467

Query: 411 V*P 403
           + P
Sbjct: 468 LRP 470


>AB032748-1|BAA92157.1|  808|Caenorhabditis elegans EAT-20A protein.
          Length = 808

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = -3

Query: 579 INFILDDIPYIQVL-LNIWIPITTISGCRLLVINNTTSTI---HQIPSPPRVKSFPTAVP 412
           IN +    P +++  L    P+T  +    L++   T T+   HQ+PS P V    T  P
Sbjct: 408 INNVTPSFPVLEISKLPTGAPVTFTATSTTLMVTQPTVTVSPTHQVPSEPFVGFTVTRAP 467

Query: 411 V*P 403
           + P
Sbjct: 468 LRP 470


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,071,928
Number of Sequences: 27780
Number of extensions: 325869
Number of successful extensions: 815
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)