Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0154.Seq
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    25   0.88 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   8.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   8.2  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -3

Query: 534 NIWIPITTISGCRLLVINNTTSTIHQIPS 448
           N W+ I  + G  L++ NN   +  ++ S
Sbjct: 197 NTWVYIADVEGYALIIYNNADDSFQRLTS 225


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 306 TVSRVCDTLDITLRP 350
           T+SR+ D  DI LRP
Sbjct: 40  TISRILDGYDIRLRP 54


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = -1

Query: 602 SFNYNNNESISFWMIFHTYRY 540
           ++NYNNN   ++  +++   Y
Sbjct: 103 NYNYNNNNYNNYKKLYYNINY 123


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +3

Query: 144 DEPIDHKGNHTARQATGHGCVKFGG 218
           ++P+D   N       GHG  K+ G
Sbjct: 263 EKPLDVSSNDKVHPLYGHGVCKWPG 287


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +3

Query: 156 DHKGNHTARQATGHGCVKFGGVRYDQVEKAKVQAKPWMELNVMA 287
           D+  N  A      G V F G +YD  +  KV   P    +V++
Sbjct: 407 DNGSNQIAFSRGCSGFVAFNGDQYDLKKNLKVCLPPGQYCDVIS 450


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,427
Number of Sequences: 438
Number of extensions: 4653
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)