Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0154.Seq
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01950.1 68417.m00260 phospholipid/glycerol acyltransferase f...    29   2.2  
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P...    29   2.8  
At2g16090.1 68415.m01845 zinc finger protein-related contains si...    28   6.6  
At1g06820.1 68414.m00727 carotenoid isomerase, putative similar ...    28   6.6  
At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containi...    28   6.6  

>At4g01950.1 68417.m00260 phospholipid/glycerol acyltransferase
           family protein contains Pfam profile PF01553:
           Acyltransferase
          Length = 520

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -3

Query: 525 IPITTISGCRLLVINNTTSTIHQIPS 448
           IPI   SGCRL V N+  S+  Q PS
Sbjct: 298 IPILAFSGCRLTVTNDYVSSQKQKPS 323


>At3g02530.1 68416.m00241 chaperonin, putative similar to
           SWISS-PROT:P80317- T-complex protein 1, zeta subunit
           (TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 535

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 433 KFPHSCSCLTKTKSIHT*ES*QDAINQGGRKV 338
           K PHSC+ L K  + HT    +DA+  G R V
Sbjct: 370 KNPHSCTILIKGPNDHTIAQIKDAVRDGLRSV 401


>At2g16090.1 68415.m01845 zinc finger protein-related contains
           similarity to zinc finger proteins and Pfam domain,
           PF01485: IBR domain
          Length = 593

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 168 NHTARQATGHGCVKFGGVRYDQVEKAKVQAKPWM 269
           +HT  + +GH C +F   +  Q+E+AK   K +M
Sbjct: 319 DHTWARISGHSCGRFQEDKEKQMERAKRDLKRYM 352


>At1g06820.1 68414.m00727 carotenoid isomerase, putative similar to
           carotenoid isomerase from Lycopersicon esculentum
           [gi:19550437]; contains Pfam profile: PF02032 Phytoene
           dehydrogenase related enzyme
          Length = 595

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 260 ALDGIECYGSRSFPRDGFPCVRYSG 334
           A+DG+ C G   FP  G   V +SG
Sbjct: 536 AIDGLYCVGDSCFPGQGVIAVAFSG 560


>At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 665

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 323 AHTGNRHAESFDCHNIQFHPRLCLNFSFLN 234
           AH G R AES   + ++  P LC ++ FL+
Sbjct: 474 AHKGYRRAESVSQNLLELDPELCGSYIFLD 503


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,262,332
Number of Sequences: 28952
Number of extensions: 307457
Number of successful extensions: 691
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)