Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0152.Seq
(638 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006675-6|AAK84556.2| 433|Caenorhabditis elegans Nuclear hormo... 29 2.1
U23517-11|AAY44017.1| 288|Caenorhabditis elegans Hypothetical p... 29 3.7
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 28 6.5
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 28 6.5
U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical p... 27 8.6
AC024791-31|AAF60655.1| 181|Caenorhabditis elegans Hypothetical... 27 8.6
>AC006675-6|AAK84556.2| 433|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 98 protein.
Length = 433
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 16 LGSSQENISESICQRCFHQSRTKVRGS 96
L + E +S ICQ CFHQ K++G+
Sbjct: 331 LEPTHEELSYMICQLCFHQVGKKLQGN 357
>U23517-11|AAY44017.1| 288|Caenorhabditis elegans Hypothetical
protein D1022.9 protein.
Length = 288
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 265 QEWSLRLNLTQHGKSHQARTPEGLTD*QLFLD 360
Q W L L H K + ARTP + D ++F++
Sbjct: 59 QYWPLMLARFSHEKPYVARTPAAIADAEMFIN 90
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Frame = +1
Query: 88 RGSKAIRYRPSSNRKYVI*RSADVTTMARRAASGKPKI---------LDSGGSMVAKLKL 240
+ S A YR + R I SA V + A +PK+ + G ++V K +
Sbjct: 2045 KNSYAGEYRCNGYRNNEIIASAAVHVHSSANADDEPKVEIEPPRVRVVSQGDNIVLKCSV 2104
Query: 241 KGIDGGHHQEWSL 279
+G + G H +W+L
Sbjct: 2105 QGAENGEHFKWAL 2117
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Frame = +1
Query: 88 RGSKAIRYRPSSNRKYVI*RSADVTTMARRAASGKPKI---------LDSGGSMVAKLKL 240
+ S A YR + R I SA V + A +PK+ + G ++V K +
Sbjct: 2138 KNSYAGEYRCNGYRNNEIIASAAVHVHSSANADDEPKVEIEPPRVRVVSQGDNIVLKCSV 2197
Query: 241 KGIDGGHHQEWSL 279
+G + G H +W+L
Sbjct: 2198 QGAENGEHFKWAL 2210
>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Frame = +1
Query: 88 RGSKAIRYRPSSNRKYVI*RSADVTTMARRAASGKPKI---------LDSGGSMVAKLKL 240
+ S A YR + R I SA V + A +PK+ + G ++V K +
Sbjct: 1951 KNSYAGEYRCNGYRNNEIIASAAVHVHSSANADDEPKVEIEPPRVRVVSQGDNIVLKCSV 2010
Query: 241 KGIDGGHHQEWSL 279
+G + G H +W+L
Sbjct: 2011 QGAENGEHFKWAL 2023
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Frame = +1
Query: 88 RGSKAIRYRPSSNRKYVI*RSADVTTMARRAASGKPKI---------LDSGGSMVAKLKL 240
+ S A YR + R I SA V + A +PK+ + G ++V K +
Sbjct: 2138 KNSYAGEYRCNGYRNNEIIASAAVHVHSSANADDEPKVEIEPPRVRVVSQGDNIVLKCSV 2197
Query: 241 KGIDGGHHQEWSL 279
+G + G H +W+L
Sbjct: 2198 QGAENGEHFKWAL 2210
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Frame = +1
Query: 88 RGSKAIRYRPSSNRKYVI*RSADVTTMARRAASGKPKI---------LDSGGSMVAKLKL 240
+ S A YR + R I SA V + A +PK+ + G ++V K +
Sbjct: 2045 KNSYAGEYRCNGYRNNEIIASAAVHVHSSANADDEPKVEIEPPRVRVVSQGDNIVLKCSV 2104
Query: 241 KGIDGGHHQEWSL 279
+G + G H +W+L
Sbjct: 2105 QGAENGEHFKWAL 2117
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Frame = +1
Query: 88 RGSKAIRYRPSSNRKYVI*RSADVTTMARRAASGKPKI---------LDSGGSMVAKLKL 240
+ S A YR + R I SA V + A +PK+ + G ++V K +
Sbjct: 2138 KNSYAGEYRCNGYRNNEIIASAAVHVHSSANADDEPKVEIEPPRVRVVSQGDNIVLKCSV 2197
Query: 241 KGIDGGHHQEWSL 279
+G + G H +W+L
Sbjct: 2198 QGAENGEHFKWAL 2210
>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Frame = +1
Query: 88 RGSKAIRYRPSSNRKYVI*RSADVTTMARRAASGKPKI---------LDSGGSMVAKLKL 240
+ S A YR + R I SA V + A +PK+ + G ++V K +
Sbjct: 1951 KNSYAGEYRCNGYRNNEIIASAAVHVHSSANADDEPKVEIEPPRVRVVSQGDNIVLKCSV 2010
Query: 241 KGIDGGHHQEWSL 279
+G + G H +W+L
Sbjct: 2011 QGAENGEHFKWAL 2023
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Frame = +1
Query: 88 RGSKAIRYRPSSNRKYVI*RSADVTTMARRAASGKPKI---------LDSGGSMVAKLKL 240
+ S A YR + R I SA V + A +PK+ + G ++V K +
Sbjct: 2138 KNSYAGEYRCNGYRNNEIIASAAVHVHSSANADDEPKVEIEPPRVRVVSQGDNIVLKCSV 2197
Query: 241 KGIDGGHHQEWSL 279
+G + G H +W+L
Sbjct: 2198 QGAENGEHFKWAL 2210
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Frame = +1
Query: 88 RGSKAIRYRPSSNRKYVI*RSADVTTMARRAASGKPKI---------LDSGGSMVAKLKL 240
+ S A YR + R I SA V + A +PK+ + G ++V K +
Sbjct: 2137 KNSYAGEYRCNGYRNNEIIASAAVHVHSSANADDEPKVEIEPPRVRVVSQGDNIVLKCSV 2196
Query: 241 KGIDGGHHQEWSL 279
+G + G H +W+L
Sbjct: 2197 QGAENGEHFKWAL 2209
>U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical
protein R144.2a protein.
Length = 823
Score = 27.5 bits (58), Expect = 8.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 262 HQEWSLRLNLTQHGKSHQARTP 327
H +W ++ NL +HG ++ A P
Sbjct: 696 HMDWHVKQNLARHGSNNSAAVP 717
>AC024791-31|AAF60655.1| 181|Caenorhabditis elegans Hypothetical
protein Y47G6A.3 protein.
Length = 181
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 273 EPAA*FDSTREISPGPDTGRIDRL 344
EP+A FD+ ++ PG RIDR+
Sbjct: 100 EPSALFDNANDLLPGQKEERIDRM 123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,081,459
Number of Sequences: 27780
Number of extensions: 324364
Number of successful extensions: 824
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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