Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0152.Seq
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22790.1 68415.m02703 expressed protein ; expression supporte...    31   0.65 
At1g67020.1 68414.m07620 hypothetical protein                          29   2.6  
At3g42120.1 68416.m04325 hypothetical protein                          29   3.4  
At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recogniti...    29   3.4  
At1g48660.1 68414.m05446 auxin-responsive GH3 family protein sim...    29   3.4  
At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putati...    29   3.4  
At5g56120.1 68418.m07001 expressed protein similar to unknown pr...    28   6.0  
At3g17465.1 68416.m02230 ribosomal protein L3 family protein           27   7.9  
At1g13160.1 68414.m01526 SDA1 family protein contains Pfam PF052...    27   7.9  

>At2g22790.1 68415.m02703 expressed protein ; expression supported
           by MPSS
          Length = 325

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 294 SQIKPQAPLLVVPSVNSFKFQLCNHTPPGVQN 199
           S + P +P+     VN FK Q  NH  PG+ N
Sbjct: 23  SSVNPSSPVYYKTIVNHFKSQTGNHVSPGLTN 54


>At1g67020.1 68414.m07620 hypothetical protein
          Length = 659

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 160 TTMARRAASGKPKILDSGGSMVAKLKLKGIDGGHHQEW 273
           ++M +R A   P +LD+  S++ ++++   DG    EW
Sbjct: 86  SSMPQRGAGESPILLDNRSSLIRRIEMPVFDGSGVYEW 123


>At3g42120.1 68416.m04325 hypothetical protein
          Length = 409

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
 Frame = -3

Query: 378 CTTTH--RIKKELLICQSFRCPGLVRFPVLSQIKPQAPLLVVPSVNSFKFQLCNHTPPGV 205
           C   H  +++ E LI   FR       PV +   P APLL+ P     ++      PP  
Sbjct: 261 CVDRHPTQVEPEFLIRAGFRVEFTTDTPVTTVTSPTAPLLLDPPPKRLRYSSPPPKPPDF 320

Query: 204 QN--LWFP 187
            N  L FP
Sbjct: 321 INKSLKFP 328


>At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recognition
           Nexus) repeat-containing protein
           /phosphatidylinositol-4-phosphate 5-kinase-related low
           similarity to phosphatidylinositol-4-phosphate 5-kinase
           AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
           Pfam profile PF02493: MORN repeat
          Length = 484

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = +2

Query: 101 RLDTALVLT---VNMSSSDPPT-LLQWLGGQLPGNQRFWTPGGVWLQS*NLKELTEGTTR 268
           RL  A +LT      SSS P T  + W  G  P  +   T  G W+Q     ++ EG   
Sbjct: 177 RLFVARLLTFIPARFSSSQPSTDRVVWSIGSKPVAENNKTNSGSWVQKYGTNDMYEGEFH 236

Query: 269 SGAC 280
            G C
Sbjct: 237 RGKC 240


>At1g48660.1 68414.m05446 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 573

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 154 DVTTMARRAASGKPKILDSGGSMVAKLKLKGIDGGHHQ 267
           DV     R A+G+P  + SGG++   ++  G  GG H+
Sbjct: 62  DVKPYIERVANGEPSDVISGGTITRFVQSTGTSGGIHK 99


>At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putative
           / LHCI type II, putative very strong similarity to PSI
           type II chlorophyll a/b-binding protein Lhca2*1
           GI:541565 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00504 chlorophyll A-B binding protein
          Length = 270

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 267 LVVPSVNSFKFQLCNHTPPGVQNLWFPGSCPP 172
           LVV         +C   PP  + LWFPGS PP
Sbjct: 45  LVVVRAGKEVSSVCEPLPPD-RPLWFPGSSPP 75


>At5g56120.1 68418.m07001 expressed protein similar to unknown
           protein (dbj|BAA81760.1)
          Length = 236

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -1

Query: 293 VKLSRRLHSWWCPPSIPLSFSFATILPPESKIFGFPEAARRAIVVTSADR*MTYLRLEL 117
           VK +     WW P ++ L+ S   +   ++K+F F +  R      + +R +T   LEL
Sbjct: 117 VKSNAVCKKWWIPSAVSLATSLVLVFLVQAKLFVFWKVYRGVNRERNDNRTLTRCVLEL 175


>At3g17465.1 68416.m02230 ribosomal protein L3 family protein
          Length = 324

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 80  RKLEVRRRLDTALVLTVNMSSSDPPTLLQWLGGQLPG 190
           RK+  R   D   V  V +   DP   L W+ GQ+PG
Sbjct: 234 RKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPG 270


>At1g13160.1 68414.m01526 SDA1 family protein contains Pfam PF05285:
           SDA1 domain; similar to mystery 45A
           (GI:16797816){Drosophila melanogaster}
          Length = 804

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 16  LGSSQENISESICQRCFHQS 75
           LG   E ++ +IC+ CFH S
Sbjct: 215 LGDKNERVAIAICEACFHSS 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,474,065
Number of Sequences: 28952
Number of extensions: 313412
Number of successful extensions: 779
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)