Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0151.Seq
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    27   2.4  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    27   3.2  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    26   4.2  

>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1237

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 529  PLLSKTGYIQLLRLQEICRILIVFLVQQCKKLS 431
            P+L    Y +LLR+QE       FL+Q+C K++
Sbjct: 1102 PVLETDHYKELLRVQEYYDKPTDFLLQECDKIA 1134


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 262 HVQSFSFEGYQMLTLSRKWVDSSS--RWNSSF 173
           H+ SFS EG++ L ++R+ +D      W  +F
Sbjct: 812 HLASFSSEGFRTLCIARRTIDKQDYLEWKVNF 843


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 87  YWPEQVLPK*CFVRDLTFHCHYFIKNIQRKEEFHLLLLSTHFRLNVSI 230
           Y  + V     F R+++    Y+++ IQ    F L+++  H+ + VSI
Sbjct: 78  YGLKNVFSSASFFREVSVRMVYYVRYIQWLINFPLIIVMLHWTVGVSI 125


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 412 NQTCHILYCPLHIFHLLNLSKIFHDGKWLLRSSYF 308
           +Q C + Y P H  ++ N+ +   D  WL  ++ F
Sbjct: 364 SQECPLFYIPYHDSYIHNVVQCLDDFPWLFLTTAF 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,797,034
Number of Sequences: 5004
Number of extensions: 59646
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)