Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0151.Seq
(667 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0650 - 4838977-4839078,4839179-4839196,4839371-4839528,483... 40 0.002
01_01_0054 + 411675-411911,412097-412213,412401-412439,412703-41... 33 0.27
10_02_0089 - 5138048-5138561,5138864-5139105,5139712-5140079,514... 32 0.47
10_08_0270 + 16378878-16380566 31 0.82
05_01_0217 + 1630083-1630205,1630467-1630710,1631695-1632508,163... 31 0.82
02_04_0022 - 18992517-18993033,18993119-18993360,18993535-189939... 30 1.4
02_04_0594 - 24182946-24183641,24184122-24184476,24184553-241847... 30 1.9
04_04_1254 + 32112471-32112593,32112645-32112665,32112882-321131... 29 2.5
07_03_0932 + 22726529-22727338,22729097-22729462,22729841-22730026 29 3.3
06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595,359... 29 3.3
04_03_0793 + 19699355-19699472,19700245-19700633,19700824-197010... 29 3.3
06_01_0540 - 3871347-3872072,3872784-3872997,3873088-3873320,387... 29 4.4
06_01_0530 - 3833291-3834016,3834728-3834941,3835032-3835264,383... 29 4.4
01_07_0034 - 40625755-40626268,40626358-40626599,40627034-406274... 28 5.8
01_06_0026 + 25738960-25739075,25740385-25740733,25740825-25741511 28 5.8
01_03_0014 + 11655216-11655287,11657833-11658048,11659848-116619... 28 5.8
>02_01_0650 -
4838977-4839078,4839179-4839196,4839371-4839528,
4839663-4839895,4840345-4840631,4841391-4841819
Length = 408
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/50 (32%), Positives = 32/50 (64%)
Frame = +3
Query: 510 PVLLSNGWRLPFDEKIDWRRAVIWADERLLLQVPELVRSVPPERILALRQ 659
PV+LS+ + LPF++ +DWR+ + ER + Q+ +++S+ E + L +
Sbjct: 316 PVILSDYYDLPFNDILDWRKFAVVLKERDVYQLKSILKSISQEEFVELHK 365
>01_01_0054 +
411675-411911,412097-412213,412401-412439,412703-412839,
413322-413670,413815-414495
Length = 519
Score = 32.7 bits (71), Expect = 0.27
Identities = 10/49 (20%), Positives = 33/49 (67%)
Frame = +3
Query: 510 PVLLSNGWRLPFDEKIDWRRAVIWADERLLLQVPELVRSVPPERILALR 656
PV++++ + LPFD+ ++W + E+ + ++ +++ ++P ++ +A++
Sbjct: 431 PVIIADNFVLPFDDALNWSAFSVVIPEKDVPKLKQILLAIPDDQYMAMQ 479
>10_02_0089 -
5138048-5138561,5138864-5139105,5139712-5140079,
5140862-5140943
Length = 401
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 510 PVLLSNGWRLPFDEKIDWRRAVIWADERLLLQVPELVRSVPPERIL 647
PV++++ LPF + I W ++ E + Q+ ++ S+P E IL
Sbjct: 290 PVIIADDIVLPFSDAIPWEEIAVFVAEDDVPQLDTILTSIPTEVIL 335
>10_08_0270 + 16378878-16380566
Length = 562
Score = 31.1 bits (67), Expect = 0.82
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +1
Query: 322 LVTTCRHGKSWKDLRDERCEEDNKEYDKFDYEQLLANSTFCIVARGRRLGSYRFLEALAA 501
L+T CR S L + R NK Y +L +STFC+ +G +A+ A
Sbjct: 363 LITQCR-ASSACSLMECRDGPSNKCGSAASYMRLFQSSTFCLQPQGDSYTRKSAFDAMLA 421
Query: 502 GC 507
GC
Sbjct: 422 GC 423
>05_01_0217 +
1630083-1630205,1630467-1630710,1631695-1632508,
1632775-1632844,1633007-1633239,1633345-1633564
Length = 567
Score = 31.1 bits (67), Expect = 0.82
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +1
Query: 271 SETRNSLWHLHDGNNLIL---VTTCRHGKSWKDLRDERCEEDNKEYDK 405
+E S+ H DG+ ++L + RH K WKD + C +KE D+
Sbjct: 455 AEAAASVAHTLDGHRILLCSEIERLRHYKQWKDKWNNPCSRLSKEKDQ 502
>02_04_0022 -
18992517-18993033,18993119-18993360,18993535-18993923,
18995447-18995603
Length = 434
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +3
Query: 510 PVLLSNGWRLPFDEKIDWRRAVIWADERLLLQVPELVRSVPPERIL 647
PV++++ LPF + I W ++ DE + ++ ++ S+P + IL
Sbjct: 322 PVIIADDIVLPFADAIPWDEIGVFVDEEDVPRLDSILTSIPIDDIL 367
>02_04_0594 -
24182946-24183641,24184122-24184476,24184553-24184743,
24184840-24185046
Length = 482
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 510 PVLLSNGWRLPFDEKIDWRRAVIWADERLLLQVPELVRSVPPERILALR 656
PV++S G+ PF + +DW + + + ++ ++R V R LR
Sbjct: 394 PVIISEGYPPPFGDVLDWGKMSVAVPAARIPELRAILRRVSERRYRVLR 442
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 409 DYEQLLANSTFCIVARGRRLGSYRFLEALAAGC 507
DY +A + FC+ G + S R +E++ AGC
Sbjct: 360 DYHAQMAAARFCLCPSGFEVASPRVVESVFAGC 392
>04_04_1254 +
32112471-32112593,32112645-32112665,32112882-32113100,
32113354-32113554,32114419-32114578,32114988-32115225,
32115326-32115447,32115852-32115880
Length = 370
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 535 LHPLLSKTGYIQLLRLQEICRILIVFLVQQCKKLS*LTTAHNQTC 401
L PL S TGY+ ++ + ++CR I ++ LS ++ C
Sbjct: 250 LKPLQSFTGYVSIVHVDDLCRAEIFLAEKESSSLSSAESSARYIC 294
>07_03_0932 + 22726529-22727338,22729097-22729462,22729841-22730026
Length = 453
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +3
Query: 510 PVLLSNGWRLPFDEKIDWRRAVIWADERLLLQ---VPELVRSVPPERILALRQQ 662
PV++S+ LPF++ ID+R I+ + +Q + +R + +RIL +++
Sbjct: 336 PVIVSDYIELPFEDVIDYRNISIFVETSKAVQPGFLTSTLRGISSQRILEYQRE 389
>06_01_0503 -
3596664-3596837,3597647-3598069,3598362-3598595,
3598720-3598993,3599390-3599523,3599572-3599634,
3599759-3599846,3599919-3599989,3600898-3601010,
3601836-3602004,3602580-3602671,3602819-3603295,
3603736-3604090
Length = 888
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/42 (45%), Positives = 20/42 (47%)
Frame = +1
Query: 241 QRKKIVHGIGSETRNSLWHLHDGNNLILVTTCRHGKSWKDLR 366
Q KKI GI E S W LH G + V RH S DLR
Sbjct: 712 QLKKIQDGIAEEILISSWELHQGTSCRGVNWDRH--SLTDLR 751
>04_03_0793 +
19699355-19699472,19700245-19700633,19700824-19701065,
19701150-19701663
Length = 420
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/46 (26%), Positives = 28/46 (60%)
Frame = +3
Query: 510 PVLLSNGWRLPFDEKIDWRRAVIWADERLLLQVPELVRSVPPERIL 647
PV++++ LPF + I W ++ +E+ + ++ ++ S+P + IL
Sbjct: 309 PVIIADDIVLPFADAIPWEEIGVFVEEKDVPKLDTILTSMPIDDIL 354
>06_01_0540 -
3871347-3872072,3872784-3872997,3873088-3873320,
3873409-3873561
Length = 441
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 412 YEQLLANSTFCIVARGRRLGSYRFLEALAAGC 507
Y + S FC+ G + S R +EA+ AGC
Sbjct: 319 YYWYMRRSRFCLCPSGHEVASPRVVEAIHAGC 350
>06_01_0530 -
3833291-3834016,3834728-3834941,3835032-3835264,
3835353-3835505
Length = 441
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 412 YEQLLANSTFCIVARGRRLGSYRFLEALAAGC 507
Y + S FC+ G + S R +EA+ AGC
Sbjct: 319 YYWYMRRSRFCLCPSGHEVASPRVVEAIHAGC 350
>01_07_0034 -
40625755-40626268,40626358-40626599,40627034-40627422,
40628119-40628227
Length = 417
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +3
Query: 510 PVLLSNGWRLPFDEKIDWRRAVIWADERLLLQVPELVRSVPPERIL 647
PV++++ LPF + I W ++ E + ++ ++ S+P + IL
Sbjct: 306 PVIIADDIVLPFADAIPWEEIGVFVAEEDVPKLDSILTSIPTDVIL 351
>01_06_0026 + 25738960-25739075,25740385-25740733,25740825-25741511
Length = 383
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 403 KFDYEQLLANSTFCIVARGRRLGSYRFLEALAAGC 507
+ Y Q + NS FC+ G + S R +EAL C
Sbjct: 258 RMSYIQHMKNSRFCLCPMGYEVNSPRIVEALYYEC 292
>01_03_0014 +
11655216-11655287,11657833-11658048,11659848-11661912,
11662966-11663013,11663081-11663328,11663429-11663558,
11663707-11663983,11664102-11664180,11664311-11664397,
11664586-11664618
Length = 1084
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +1
Query: 238 LQRKKIVHGIGSETRNSLWHLHDGNNLILVTTCRHGKSWKDLRDERCEEDNKEY 399
LQR + + T+N +WH+ +G +++L G+ +K + D+ C K Y
Sbjct: 131 LQRVDNNYSLRYFTKNEVWHITNGYSIMLGKGA-FGEVYKGILDDGCPVAVKRY 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,148,270
Number of Sequences: 37544
Number of extensions: 387723
Number of successful extensions: 1164
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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