Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0151.Seq
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)             131   4e-31
SB_31787| Best HMM Match : Exostosin (HMM E-Value=8.8e-07)             38   0.007
SB_57249| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.068
SB_11191| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_32076| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               30   1.9  
SB_50086| Best HMM Match : DUF1295 (HMM E-Value=1.9e-12)               29   2.6  
SB_33873| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_20347| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-20)         29   3.4  
SB_38305| Best HMM Match : CW_binding_1 (HMM E-Value=0.4)              28   5.9  

>SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score =  131 bits (317), Expect = 4e-31
 Identities = 51/90 (56%), Positives = 75/90 (83%)
 Frame = +1

Query: 247 KKIVHGIGSETRNSLWHLHDGNNLILVTTCRHGKSWKDLRDERCEEDNKEYDKFDYEQLL 426
           K+ ++GIGSE+RN+L+H+H+G +++L+TTC+HGK+W   +DERC+ DN  YD++ Y++LL
Sbjct: 256 KRYLNGIGSESRNALYHIHNGRDIVLLTTCKHGKAWHKHKDERCDGDNALYDRYSYDELL 315

Query: 427 ANSTFCIVARGRRLGSYRFLEALAAGCNQF 516
            N+TFC+V RGRRLGS+RFLE+L  GC  F
Sbjct: 316 LNATFCLVPRGRRLGSFRFLESLKVGCIPF 345



 Score =  103 bits (248), Expect = 1e-22
 Identities = 50/85 (58%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
 Frame = +2

Query: 5   NHLIFNLYAGTWPDYAEDSLGFDPGEAILARASASEIMFREGFDISLPLFHKEHPEK--G 178
           NH+IFNL+AGTWPDY+ED +GFD G+AIL +AS S  + R GFD+SLPLF K HP K  G
Sbjct: 176 NHIIFNLFAGTWPDYSED-VGFDFGKAILVKASLSSDLIRPGFDVSLPLFPKTHPHKDLG 234

Query: 179 GVPPAATVNPFPAQRKHLVAFKGKR 253
            +P + +   FP +RK+ +AFKGKR
Sbjct: 235 NLPHSCSA--FPLERKYKLAFKGKR 257



 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 30/52 (57%), Positives = 40/52 (76%)
 Frame = +3

Query: 510 PVLLSNGWRLPFDEKIDWRRAVIWADERLLLQVPELVRSVPPERILALRQQT 665
           P LLS+GW LPF E IDW++AVI   ERLL+QVP +VRS    ++LA++QQ+
Sbjct: 344 PFLLSDGWELPFAEVIDWKKAVIDGSERLLMQVPGIVRSYSRSQVLAMKQQS 395


>SB_31787| Best HMM Match : Exostosin (HMM E-Value=8.8e-07)
          Length = 497

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 21/50 (42%), Positives = 28/50 (56%)
 Frame = +2

Query: 2   RNHLIFNLYAGTWPDYAEDSLGFDPGEAILARASASEIMFREGFDISLPL 151
           +NHLIFN+  G  PD+    L    G+AI A  S S   +R GFD  +P+
Sbjct: 168 QNHLIFNMLPGGPPDF-NSILDVPLGKAIQAGGSMSTQTYRPGFDGCIPI 216



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +3

Query: 510 PVLLSNGWRLPFDEKIDWRR 569
           P+++S+ + LPF E +DW+R
Sbjct: 215 PIVVSDDYVLPFSEVLDWKR 234


>SB_57249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 34.7 bits (76), Expect = 0.068
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +3

Query: 510 PVLLSNGWRLPFDEKIDWRRAVIWADERLLLQVPELVRSVPPERILALRQQ 662
           PV+L     LP  E IDWR   I      ++++  ++R+V  E I  LRQQ
Sbjct: 145 PVILGTTNMLPLAEFIDWRSVSITLTPARIMELNTILRTVSSEDIHNLRQQ 195


>SB_11191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1577

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/61 (36%), Positives = 31/61 (50%)
 Frame = -1

Query: 379 HIFHLLNLSKIFHDGKWLLRSSYFHHVNATKNYGFHYQYHVQSFSFEGYQMLTLSRKWVD 200
           HI  LLNLS +F+DG  L R   F+ V  T   G     +V   S+ G  +  L +K ++
Sbjct: 221 HINDLLNLSPVFNDGD-LTRLRRFYDVAETHFRGLE-ALNVNETSYSGIVVPALLQKLLN 278

Query: 199 S 197
           S
Sbjct: 279 S 279


>SB_32076| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 2352

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = -1

Query: 379 HIFHLLNLSKIFHDGKWLLRSSYFHHVNATKNYGFHYQYHVQSFSFEGYQMLTLSRKWVD 200
           HI  LLNLS +F+DG  L R   F+ V  T   G     +V   S+ G  +  L +K  +
Sbjct: 98  HINDLLNLSPVFNDGD-LTRLRRFYDVAETHFRGLE-ALNVNETSYSGIVVTALLQKLPN 155

Query: 199 S 197
           S
Sbjct: 156 S 156


>SB_50086| Best HMM Match : DUF1295 (HMM E-Value=1.9e-12)
          Length = 263

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 403 KFDYEQLLANSTFCIVARGRRLGSYRFLEALAAG 504
           KF++ QL+   T C+ A G RLGS+ F   L  G
Sbjct: 132 KFNFRQLV--QTGCVTAWGLRLGSFLFARVLRDG 163


>SB_33873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1362

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = -1

Query: 379 HIFHLLNLSKIFHDGKWLLRSSYFHHVNATKNYGFHYQYHVQSFSFEGYQMLTLSRKWVD 200
           HI  LLNLS +F+DG  L R   F+ V  T   G     +V   S+ G  +  L +K  +
Sbjct: 213 HINDLLNLSPVFNDGD-LTRLRRFYDVAETHFRGLE-ALNVNETSYSGIVVPALLQKLPN 270

Query: 199 S 197
           S
Sbjct: 271 S 271


>SB_20347| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-20)
          Length = 1074

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = -1

Query: 379 HIFHLLNLSKIFHDGKWLLRSSYFHHVNATKNYGFHYQYHVQSFSFEGYQMLTLSRKWVD 200
           HI  LLNLS +F+DG  L R   F+ V  T   G     +V   S+ G  +  L +K  +
Sbjct: 27  HINDLLNLSPVFNDGD-LTRLRRFYDVAETHFRGLE-ALNVNETSYSGIVVPALLQKLPN 84

Query: 199 S 197
           S
Sbjct: 85  S 85


>SB_38305| Best HMM Match : CW_binding_1 (HMM E-Value=0.4)
          Length = 1145

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 316 LILVTTCRH-GKSWKDLRDERCEEDNKEYDKFDYE 417
           L+ + +CR  G    D  DE C++D+ +YD  DY+
Sbjct: 39  LLRLASCRVVGDDDDDDDDEGCDDDDDDYDDDDYD 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,490,256
Number of Sequences: 59808
Number of extensions: 422149
Number of successful extensions: 1200
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)