Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0150.Seq
(736 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 31 0.17
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 29 0.69
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 29 0.91
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 28 1.6
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||... 28 1.6
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 27 2.1
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 2.1
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 27 2.1
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 27 3.7
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 26 4.8
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 26 4.8
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 26 6.4
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 26 6.4
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 25 8.5
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 8.5
SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm... 25 8.5
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 31.1 bits (67), Expect = 0.17
Identities = 19/83 (22%), Positives = 40/83 (48%)
Frame = -3
Query: 476 EKKQKAPVKQEKTEKSNDETAADCIIVANKAIDVDTAIDLLTQAIDEEDVAEITDEGSKT 297
E+ + P K+ K + S D+TAAD + + + ++ + IDE ++ + + +
Sbjct: 1845 ERDEDIPNKRAKNKVSTDQTAADNKVTKPRLDESSSSKQDVLNKIDESEIEQASSKKPGY 1904
Query: 296 AEVSKTADDENNANMQKKVREKV 228
E +K D+ + KK + K+
Sbjct: 1905 VEKNK---DKGHMKKSKKPKSKL 1924
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 29.1 bits (62), Expect = 0.69
Identities = 19/85 (22%), Positives = 41/85 (48%)
Frame = -3
Query: 497 MKCGSENEKKQKAPVKQEKTEKSNDETAADCIIVANKAIDVDTAIDLLTQAIDEEDVAEI 318
+K + ++ K+ V+++ E +N TA + ++ +AI A+D+E++
Sbjct: 836 LKYELKKQQNSKSEVERDLVETNNSLTAVENLLTTERAI-----------ALDKEEILRR 884
Query: 317 TDEGSKTAEVSKTADDENNANMQKK 243
T E E S + + N N+Q++
Sbjct: 885 TQERLANIEDSFSETKQQNENLQRE 909
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 28.7 bits (61), Expect = 0.91
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = -3
Query: 485 SENEKKQKAPVKQEKTEKSN-DETAADCIIVANKAIDVDTAIDLLTQAIDE--EDVAEIT 315
+E K +K+EK N D + + +D+ ID L + I+E E + EI+
Sbjct: 151 TEEMSKTLRALKEEKKMYFNYDNFLSSQTVHEENTAALDSEIDELMKQINEKEEKIEEIS 210
Query: 314 DEGSKTAEVSKTADDE 267
DE K ++ + D+E
Sbjct: 211 DETDKLQKLLRELDEE 226
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.9 bits (59), Expect = 1.6
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = -3
Query: 485 SENEKKQ--KAPVKQEKTEKSNDETAADCIIVANKAIDVDTAIDLLTQAID--EEDVAEI 318
SE EK + V+ E ND+T + VA+ VD +D +A+D E++++++
Sbjct: 2 SEEEKAELENMQVESEAKTSENDQTIDTKVDVADVTTHVDEDLDNKEEALDFSEDELSDL 61
Query: 317 TDEGSKTAEVSK 282
+ + + SK
Sbjct: 62 DENQFENFDESK 73
>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 319
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = -2
Query: 729 LCQKSMEGRLEQLIRREKKNLKPIEEIQENEVERKLSQYHRSCIVKYARL 580
L + ME LE+L + E ++E+Q +E+E ++S SCI + A+L
Sbjct: 70 LSKPLMECSLEELSKLE------LDEVQRDEIEHEVSSAISSCIHQIAKL 113
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 27.5 bits (58), Expect = 2.1
Identities = 29/83 (34%), Positives = 39/83 (46%)
Frame = -3
Query: 485 SENEKKQKAPVKQEKTEKSNDETAADCIIVANKAIDVDTAIDLLTQAIDEEDVAEITDEG 306
SEN + KA +EK S D + D I +++D D +L T D+ED DE
Sbjct: 252 SENLLQDKAEA-EEKV--SADASVQD--IAEKESLDADK--ELATN--DQED-----DEE 297
Query: 305 SKTAEVSKTADDENNANMQKKVR 237
AE K NN NMQ +V+
Sbjct: 298 ENQAETQKDGAISNNENMQSEVQ 320
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/92 (20%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = -3
Query: 503 KMMKCGSENEKKQKAPVKQEKTEKSNDETAADCIIVANKAIDVDTAIDLLTQAIDEEDVA 324
K +K +++KK+++ + E +E S+ E+ + + + + +++ + + EE+V
Sbjct: 69 KSVKKQKKSKKKEESSSESE-SESSSSESESSSSESESSSSESESSSSESSSSESEEEVI 127
Query: 323 EITDEGSK-TAEVSKTADDENNANMQKKVREK 231
T+E + ++E S +++ E K+ EK
Sbjct: 128 VKTEEKKESSSESSSSSESEEEEEAVVKIEEK 159
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 380 DVDTAIDLLTQAIDEEDVAEITDE-GSKTAEVSKTADDENNANMQKKVRE 234
DVD I LT + EE+ E + E G T E+S DD +A+ +++ E
Sbjct: 50 DVDEEIPSLTAELSEEEEGEYSSESGRSTPELS--PDDFEDADDEEEFEE 97
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = +3
Query: 117 PFKVLHQGHL--PSCRFRC-PNRNR 182
P+KV+H HL P RFR PN +R
Sbjct: 125 PYKVIHAAHLTKPQLRFRVQPNNSR 149
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -3
Query: 365 IDLLTQAIDE---EDVAEITDEGSKTAEVSKTAD 273
I+LL +D ED+ ++ D ++ AEVS T D
Sbjct: 50 IELLLSKVDRSRAEDIVDVEDIDNRWAEVSDTLD 83
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 320 ITDEGSKTAEVSKTADDENNANMQKKVRE 234
I EGSK+ +S TA N+ M+K++ +
Sbjct: 100 INSEGSKSETISDTAISGNDDTMEKRLEQ 128
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -2
Query: 708 GRLEQLIRREKKNLKPIEEIQENEVERKLSQYHRSCIVKYARLP 577
G +L KN I++I EVE++ RS ++ +R+P
Sbjct: 87 GSENELDEETTKNANSIKKISLEEVEKQRKAIKRSGVIYLSRIP 130
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/96 (16%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Frame = -3
Query: 509 LLKMMKCGSENEKKQKAPVKQEKTEKSNDETAAD---CIIVANKAIDVDTAIDLLTQAID 339
L K SE E ++ ++E S +E+ ++ + KA+ + +++ +
Sbjct: 30 LKKQDDSSSEEESSEEESASSSESESSEEESESEESEVEVPKKKAVAASEDSESDSESSE 89
Query: 338 EEDVAEITDEGSKTAEVSKTADDENNANMQKKVREK 231
EE+ E ++ + E ++ E+ + + + E+
Sbjct: 90 EEEETESEEDSEVSDESESESESESESEEESESEEE 125
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.8 bits (54), Expect = 6.4
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Frame = -3
Query: 509 LLKMMKCGSENEKKQKAPVKQEKTEKSNDETAADCIIVANKAIDV------DTAIDLLTQ 348
+LK G E K + E ND+ + D I A + +DV +T + +
Sbjct: 357 ILKNWSPGLEKPAKPEVNFNNLPLEIVNDDDSEDDIYAAEELLDVIANLQDETGVTRIAN 416
Query: 347 AIDEEDV-AEITDEGSKTAEVSKTADDENNAN 255
+ED A++TD A DD+N+ N
Sbjct: 417 LGGDEDFEADMTD--PTIAGFDHPLDDDNDVN 446
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 8.5
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = -3
Query: 503 KMMKCGSENEKKQKA-PVKQEKTEKSNDETAADCIIVANKAIDVDTAIDLLTQAIDEEDV 327
K+ +E +K + P Q++ K+ E + I +K +V+ D L Q + +
Sbjct: 72 KLALLAAERKKLHSSFPSTQQQPPKTEKEKEKEPIQAKHKK-NVEN--DFLLQRFRKVRI 128
Query: 326 AEITDEGSKTAEVSKTADDENNANMQKKVRE 234
AE D ++ DD++ +QK++ E
Sbjct: 129 AEKKDSEQPSSHEIHLTDDDDKTTLQKQMVE 159
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.4 bits (53), Expect = 8.5
Identities = 21/89 (23%), Positives = 40/89 (44%)
Frame = -3
Query: 485 SENEKKQKAPVKQEKTEKSNDETAADCIIVANKAIDVDTAIDLLTQAIDEEDVAEITDEG 306
++ + PVK++KT ND+ + + + + VD+A LT E + + +E
Sbjct: 940 ADTDVSSTEPVKRQKTADVNDDVGEE-EVKQSVSEQVDSA--QLTSEPKSESLPKSPEEK 996
Query: 305 SKTAEVSKTADDENNANMQKKVREKVITV 219
S T ++ N+ N + + V TV
Sbjct: 997 SDDTSNDVTTENTNDINGDSNM-DNVATV 1024
>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = -3
Query: 542 W*TPSY*RETALLKMMKCGSENEKKQKAPVKQEKTEKSNDETAADCIIVANKAIDVDTAI 363
W + R+T L + N + + E+ K+N+ T + I ANKA++ T +
Sbjct: 140 WPSEDQMRKTLLFQFSTSMVPNLSATASQLFSEQPPKTNEPTETETEIDANKAVEEKTKM 199
Query: 362 D 360
+
Sbjct: 200 N 200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,424
Number of Sequences: 5004
Number of extensions: 38435
Number of successful extensions: 184
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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