Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0149.Seq
         (623 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    23   1.6  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   4.8  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   6.3  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   6.3  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   8.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.4  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   8.4  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 2   LCCACVTTRANFAAYTADEDPAMVSMGSWK-RRVPDDCXERSEPGASSSGVPRAPPN 169
           LC A +        + AD + ++V +  WK   + D+C ER        GV  +PPN
Sbjct: 8   LCLATLALGLFVPHFAADRN-SIVHLFEWKWSDIADEC-ERFLAPKGFGGVQISPPN 62


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 388 PVPPVVKAPRSPMIPPSAPRSLGSASCDS 474
           P+P V   P  P+ PP+      SA C+S
Sbjct: 176 PLPQVPPLPLPPIFPPTMINP--SAICES 202


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 561 RGLVSVVAWLAAEALTAVSVW 499
           R L + +AWL  E    + +W
Sbjct: 837 RSLKTKMAWLKEEGFGGIMIW 857


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 409 PSPLVVQAYPTPSPG 365
           P+ ++ + YP+P PG
Sbjct: 315 PTSVMTELYPSPVPG 329


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -2

Query: 391 QAYPTPSPGAVFLIPAHAHALRPEPGPV 308
           Q  P PS G     P     + PEP P+
Sbjct: 68  QVTPLPSDGTTSPEPDPEIPVAPEPAPL 95


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 137  SSSGVPRAPPNCARC 181
            ++ GVP  PP+ A C
Sbjct: 1095 TAEGVPEQPPDKATC 1109


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 152 PRAPPNCARCRNHRLKI 202
           PRA P    CR++RL +
Sbjct: 242 PRARPLARTCRDNRLLV 258


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,516
Number of Sequences: 336
Number of extensions: 3084
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)