Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0149.Seq
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    32   0.059
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.10 
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    31   0.14 
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    30   0.24 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.31 
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    27   2.9  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    26   3.8  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    26   5.1  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    25   6.7  

>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 32.3 bits (70), Expect = 0.059
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +1

Query: 388 PVPPVVKAPRSPMIPPSAPRSLGSASCDS 474
           P PP V   ++P IPP APR+L +AS DS
Sbjct: 379 PKPPSVPTIQAP-IPPEAPRNLTNASVDS 406


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 388 PVPPVVKAPRSPMIPPSAPRSL--GSASCDSVPGSPGVSP 501
           P PP +     P +PPSAP SL  G+ +   +P S  ++P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAP 457



 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 364 PPGMELDRPVPPVVKAPRSPMIPPSAPRSLGSASCDSVPGSPGVSPYA 507
           PP +    P    + AP +P +PPSAP  +       +P +P + P A
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAP--IAPPLPAGMPAAPPLPPAA 473



 Score = 26.6 bits (56), Expect = 2.9
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
 Frame = +1

Query: 391 VPPVVKA--------PRSPMIPPSAPRSLGSASCDSVP-GSPGVSP 501
           +PP+  A        P  P +PPSAP SL  ++  S+P G+P   P
Sbjct: 403 LPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448



 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +1

Query: 364 PPGMELDRPVPPVVKA-PRSPMIPPSAP 444
           P GM    P+PP   A P +P   P+AP
Sbjct: 460 PAGMPAAPPLPPAAPAPPPAPAPAPAAP 487


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +1

Query: 367 PGMELDRPVPPVVKAPRSPMIPPSAPRSLGSASCDSVPGSPGV 495
           PGM    PVP    A   PM+ P +  S G A  ++VP  PG+
Sbjct: 530 PGMNARGPVP----AQGRPMMMPGSVPSAGPAEAEAVPAVPGM 568


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +1

Query: 364 PPGMELDRPVPPVVKA-PRSP--MIPPSAPRSLGSASCDSVPGSPGVS 498
           PPGM    P  P V A P  P    PP AP S  ++   ++   PGVS
Sbjct: 532 PPGMPAPFPGYPAVPAMPGIPGATAPPGAPGSYNTSESSNLNAPPGVS 579


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
 Frame = +1

Query: 364  PPGMELDRP------VPPVVKAPRSPMIPPSA-PRSLGSASCDSVPGSPG 492
            PP M    P      VPP   AP  P  PPSA P  L ++S  SVP +PG
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP-NPG 1747



 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +1

Query: 358  IQP--PGMELDRPVPPVVKAPRSPM--IPPSAPRSLGSASCDSVPGSP 489
            +QP  PGM  + P P    AP +P+  +PP+ P     +   SV   P
Sbjct: 1458 VQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQP 1505


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 84  EPIDTIAGSSSAVYAAKLARVVTHAQ 7
           EP+  IA     +YAAK+A   +HA+
Sbjct: 145 EPVSIIADHIEIIYAAKIAAHASHAK 170


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +1

Query: 430 PPSAPRSLGSASCDSVPGSPGVSPYAHRRQCLRR 531
           PP  PR+L S+  D+      VS   H R    R
Sbjct: 292 PPEVPRNLNSSLVDAAESLANVSQQQHHRHPFAR 325


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 122 SEPGASSSGVPRAPPNCARCRNHRLKIELKGHKRYCKYQHCTCESA 259
           S P A      R+P +C  CR  ++K + +     CK ++  C  A
Sbjct: 3   SSPPALKKFRKRSPKSCLICRRRKVKCDRQQPCSRCKERNEVCTYA 48


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 364 PPGMELDRPVPPVVKAPRSPMIP 432
           PPGM +  P P     P +P++P
Sbjct: 293 PPGMVMASPSPAAATIPGAPVMP 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,850
Number of Sequences: 5004
Number of extensions: 42953
Number of successful extensions: 176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)