Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0147.Seq
         (703 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    26   0.26 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   0.60 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   0.60 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   2.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.2  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   5.6  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    21   7.4  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   7.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.7  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   9.7  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   9.7  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   9.7  

>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +1

Query: 250 VTPA*RIKTGKPPALAD--YHPAYQEMLSRSANWH*WQINPPP 372
           +TP        PP+  D  Y+P Y + L  +A +H  Q   PP
Sbjct: 19  LTPPHNPAYSPPPSYCDPWYNPYYYQYLQNAALYHKLQFRGPP 61


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
 Frame = +1

Query: 367 PPAAIRLKVGLPPWQKTGSCYRSDRFWHQRH---RRNSAYGADAEPDSYHIKKTHPQVIE 537
           PP A R  +  P   +    YR+DR   Q+H    +N   G    P+   + +  P V  
Sbjct: 274 PPFASRGSMHFPNQYQMNQEYRTDRKHTQQHYQMNQNMYPGEMYNPEHTTVNEAQPYVRN 333

Query: 538 PL--TQRIQTRNDQRCHNFVQP 597
               TQ +   +  R +N+  P
Sbjct: 334 TTVPTQGVARMSRGRQYNYPNP 355


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
 Frame = +1

Query: 367 PPAAIRLKVGLPPWQKTGSCYRSDRFWHQRH---RRNSAYGADAEPDSYHIKKTHPQVIE 537
           PP A R  +  P   +    YR+DR   Q+H    +N   G    P+   + +  P V  
Sbjct: 222 PPFASRGSMHFPNQYQMNQEYRTDRKHTQQHYQMNQNMYPGEMYNPEHTTVNEAQPYVRN 281

Query: 538 PL--TQRIQTRNDQRCHNFVQP 597
               TQ +   +  R +N+  P
Sbjct: 282 TTVPTQGVARMSRGRQYNYPNP 303


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
 Frame = +1

Query: 367 PPAAIRLKVGLPPWQKTGSCYRSDRFWHQRH---RRNSAYGADAEPDSYHIKKTHPQV 531
           PP A R  +  P   +    YR+DR   Q+H    +N   G    P+   + +  P V
Sbjct: 405 PPFASRGSMHFPNQYQMNQEYRTDRKHTQQHYQMNQNMYPGEMYNPEHTTVNEAQPYV 462


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/40 (20%), Positives = 20/40 (50%)
 Frame = +2

Query: 395 DFRHGRKQDRVIDQIDFGIKDTVEILHMGQMQSLTVITSK 514
           D+R   + +++   + +G+KD  E    GQ+     + ++
Sbjct: 238 DYRKRFRMEKIYVALVWGVKDQAEFTLSGQVMKYAALATE 277


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 445 WHQRHRRNSAY 477
           WH  H++NS Y
Sbjct: 135 WHGHHQKNSPY 145


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 309 RMIICQSWWFASLYPL 262
           R +I  +W+F++LY L
Sbjct: 140 RYLILAAWFFSALYSL 155


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 346 ASSLTVKAFLDMQDDNLPKLVV 281
           A  +  +AFLD+++DN  ++ V
Sbjct: 461 AFGIVRRAFLDLKEDNKTQVAV 482


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -3

Query: 419 PVFCHGGSP 393
           P FCH G P
Sbjct: 125 PFFCHNGDP 133


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -3

Query: 419 PVFCHGGSP 393
           P FCH G P
Sbjct: 17  PFFCHNGDP 25


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 383 RIAAGGGFIC 354
           RI+ GGG+IC
Sbjct: 392 RISDGGGYIC 401


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 288 SFGRLSSCISRN 323
           SFG L SC+SR+
Sbjct: 542 SFGYLISCVSRS 553


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 288 SFGRLSSCISRN 323
           SFG L SC+SR+
Sbjct: 542 SFGYLISCVSRS 553


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,347
Number of Sequences: 336
Number of extensions: 3997
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)