Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0147.Seq
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           27   2.6  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    27   3.4  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    27   3.4  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    25   7.9  
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    25   7.9  

>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 219 LTHEPCKLLIGYPCITDKDWQTTSFGRLSSC 311
           +T E  +LL+    I    W+TTS G  S C
Sbjct: 838 VTDEVIELLVASVYINSSSWRTTSSGETSFC 868


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 433 SDRFWHQRHRRNSAYGADAEPDSYHIKK 516
           S R+W + HR +  Y  D + D Y++KK
Sbjct: 139 SIRWWSRDHRAHHRY-TDTDKDPYNVKK 165


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 457 HRRNSAYGADAEPDSYHIKKTH 522
           HRR  +Y  D+  DSY  K+ H
Sbjct: 325 HRRYDSYHPDSRSDSYRSKREH 346


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 606 YRKRLYKIMTSLVVPGLDTLRQWLD--DLGMSFFDVITVRLCICP 478
           Y   +Y+ MTSLV  G+     WL+   +  SF D ++V +   P
Sbjct: 417 YFSFVYRAMTSLVQDGIRMEYHWLELWRVLFSFLDFVSVLINTSP 461


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 487 HLPHMQNFDGVFDAKIDLIDNTI 419
           + PH+ N DG F AK+  I + I
Sbjct: 526 YYPHVHNIDGFFVAKLKKISDKI 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,938
Number of Sequences: 5004
Number of extensions: 64429
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)