Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0147.Seq
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0585 - 5237547-5237930,5237995-5238072,5238163-5238405,523... 30 1.5
12_01_0750 - 6754126-6755248,6755331-6755791 29 4.7
11_06_0412 - 23235670-23236512,23236804-23237838 29 4.7
09_06_0199 + 21526872-21527250,21527431-21527594,21527673-215277... 29 4.7
02_05_0583 + 30128795-30129158,30129342-30129505,30129602-301296... 29 4.7
01_01_0629 - 4738519-4738607,4738700-4738828,4738921-4739011,473... 29 4.7
02_01_0641 + 4800371-4800703,4801703-4801863,4802013-4802379 28 6.2
01_06_0670 + 31069976-31070073,31070461-31070581,31070669-310707... 28 6.2
01_06_0217 - 27624588-27625817,27626203-27626484,27626582-27626692 28 6.2
11_06_0594 + 25349612-25352530 28 8.3
03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218... 28 8.3
>05_01_0585 -
5237547-5237930,5237995-5238072,5238163-5238405,
5238515-5238661,5238780-5238863,5238969-5239040,
5239153-5239248,5239345-5239410,5239537-5239642,
5239749-5239900,5240238-5240433,5240791-5240879
Length = 570
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -1
Query: 418 LFSAMAEVRPSAVLPLAADLSAINASSLTVKAFLDMQ 308
L++A+ VRPSA LP+ D+ N S L + ++ ++
Sbjct: 192 LYTALGGVRPSACLPITIDVGTNNESLLNDEFYIGLK 228
>12_01_0750 - 6754126-6755248,6755331-6755791
Length = 527
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -3
Query: 290 AGGLPVFIRYAGVTYEQFAWFVRQSEEQISMVILEANAHQLLLPTDD--EGQNNVTE 126
AG +PVF A +Q+ W R ++ ++ + +++ DD EG+ + E
Sbjct: 395 AGCIPVFFHEASTFKKQYQWHERDADADNDNATVDRRRYSVVIDPDDVVEGRVRIEE 451
>11_06_0412 - 23235670-23236512,23236804-23237838
Length = 625
Score = 28.7 bits (61), Expect = 4.7
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 199 WSFLKLMPINCCYRLMMK 146
W F L+ +NCCYR++ +
Sbjct: 134 WLFWSLLALNCCYRILAR 151
>09_06_0199 +
21526872-21527250,21527431-21527594,21527673-21527736,
21528001-21528134,21528302-21528385,21528526-21528600,
21528683-21528754,21528852-21528925,21529185-21529282,
21529355-21529464,21529794-21529862,21529944-21530018,
21530519-21530611,21530690-21530769,21530877-21530976,
21531150-21531586,21531676-21531706,21532873-21533822,
21533982-21534201
Length = 1102
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 481 PHMQNFDGVFDAKIDLIDNTI 419
PH+ N DG F AK+ + NTI
Sbjct: 545 PHVNNMDGFFVAKLKKLSNTI 565
>02_05_0583 +
30128795-30129158,30129342-30129505,30129602-30129665,
30130082-30130215,30130369-30130452,30130580-30130654,
30130734-30130805,30130892-30130965,30131217-30131269,
30131388-30131497,30131824-30131892,30131975-30132049,
30132449-30132508,30132555-30132647,30132718-30132797,
30132877-30132976,30133153-30133590
Length = 702
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 481 PHMQNFDGVFDAKIDLIDNTI 419
PH+ N DG F AK+ + NTI
Sbjct: 545 PHVNNMDGFFVAKLKKLSNTI 565
>01_01_0629 -
4738519-4738607,4738700-4738828,4738921-4739011,
4739103-4739177,4739529-4739618,4739742-4739840,
4739934-4739987,4740084-4740131,4740232-4740330,
4740458-4740541,4740650-4740721,4740812-4740907,
4741012-4741077,4741148-4741253,4741350-4741501,
4741634-4741708,4741792-4741912,4742968-4743209,
4743328-4743381
Length = 613
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -1
Query: 418 LFSAMAEVRPSAVLPLAADLSAINASSLTVKAFLDMQ 308
L++A+ VRPSA LP+ D+ N L + ++ ++
Sbjct: 261 LYTALGGVRPSACLPITIDVGTNNEQLLNDEFYIGLR 297
>02_01_0641 + 4800371-4800703,4801703-4801863,4802013-4802379
Length = 286
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 100 FRARSRWCSGCALQNYLLFLTFS*RLFHF 14
F A R CSG A ++ L FS LFHF
Sbjct: 198 FGAGRRMCSGLAFAEAIIDLLFSTLLFHF 226
>01_06_0670 +
31069976-31070073,31070461-31070581,31070669-31070743,
31070863-31071014,31071171-31071276,31071409-31071474,
31071562-31071657,31071764-31071835,31071925-31072008,
31072147-31072245,31072721-31072768,31072857-31072910,
31072991-31073089,31073182-31073271,31073371-31073448,
31073584-31073658,31073806-31073896,31074014-31074142,
31074235-31074323
Length = 573
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -1
Query: 418 LFSAMAEVRPSAVLPLAADLSAINASSLTVKAFLDMQ 308
L++A+ VRPSA LP+ D+ N L + ++ ++
Sbjct: 195 LYTALGGVRPSACLPITIDVGTNNEDLLKDEFYIGLR 231
>01_06_0217 - 27624588-27625817,27626203-27626484,27626582-27626692
Length = 540
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 490 EPDSYHIKKTHPQVIEPLTQRIQTRNDQRCHNFVQPLSIKRPAQLT 627
+P Y+I++ PQ+++ T Q ++ + P S ++PA T
Sbjct: 315 QPQQYNIQQVPPQLVQQQTSSPQAQSAPQVAVLYPPYSSQKPASAT 360
>11_06_0594 + 25349612-25352530
Length = 972
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 242 AHRLPLHNG*RLANHQLWQIIILHIKKCF 328
AHRLP+HNG RL ++ H C+
Sbjct: 556 AHRLPIHNGERLQQVSRIKLRASHFDDCW 584
>03_06_0003 + 30921197-30921388,30921514-30921632,30921742-30921811,
30922078-30922161,30922258-30922344,30922431-30922501,
30922648-30922702,30923374-30923509,30925009-30925103,
30925203-30925357,30925435-30925543,30925761-30925817,
30925913-30926027,30926177-30926264,30926738-30927501,
30927600-30927688,30928315-30928422,30928550-30928657,
30928887-30928977,30929235-30929287,30929557-30929712,
30930763-30930825,30931491-30931535,30932075-30932130,
30933051-30933132,30933238-30933354,30933428-30933530,
30933912-30934062,30934180-30934417,30934564-30934764,
30934850-30934935,30935036-30935135
Length = 1347
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +3
Query: 261 ITDKDWQTTSFGRLSSCISRNAFTVSELALMADKSAASGNTAEGRTSAMAENRIVLS 431
+ DK W + G A +S LAL++D +G RT A+ R + S
Sbjct: 1216 VQDKLWSIYAAGNTVPIPFLKAIDISPLALVSDSVVGNGLAGSNRTDALEAVRELFS 1272
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,695,519
Number of Sequences: 37544
Number of extensions: 469838
Number of successful extensions: 1220
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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