Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0147.Seq
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)              29   2.8  
SB_39878| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_58872| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)         28   6.4  
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)              28   8.4  

>SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1324

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +1

Query: 469 SAYGADAEPDSYHIKKTHPQVIEPLTQRIQTRND--QRCHNFVQPLSIKRPAQLTQKAQA 642
           S Y   + PDS+H+K      +E +TQ I   ND  Q  H  V   S ++  + T+  + 
Sbjct: 723 SKYTEASHPDSFHLK----NALEKMTQMINLLNDSIQNSHKVVNSASPRKNTRKTKSLRK 778

Query: 643 K 645
           K
Sbjct: 779 K 779


>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
          Length = 1230

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
 Frame = +1

Query: 364  PPPAAIRLKVGLPPWQKTGSCYRSDRFWHQRHRRNSAYGADAEPDSYHIKKTHPQVIEPL 543
            PPP + +     PP Q  GS     RF     ++        + D Y  ++ + Q+++PL
Sbjct: 964  PPPFSSQFAAPWPPMQPYGSYDMWGRFAMSGPQQQQQQALAWQQDQYEPQRVNYQMLDPL 1023

Query: 544  TQRIQT--RNDQRCHNFVQPLSIK 609
              +  T  +N Q+    V+ +  K
Sbjct: 1024 LIQALTKVKNTQKAAEVVKKIEDK 1047


>SB_39878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1052

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 144 AKQRYRKLFPPLITPFEHAVAGAVAARCKIICCF 43
           A +RY  +F PL+ P +HAV  +VA    + C F
Sbjct: 612 AVERYLGVFFPLLLPTKHAVRCSVAGAWVLGCVF 645


>SB_58872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 4   RHKRSEIIFKKRLKTADNFAARSHCTSDCVLERSYQ 111
           RHK+++ +  +RLK A     R H  +  +L R ++
Sbjct: 123 RHKKAQTLLTRRLKKAQTLLTRRHKKAQTLLTRRHK 158


>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
          Length = 2269

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -2

Query: 450 MPKSI*SI--TRSCFLPWRKSDLQPYCRWRRIYLPSMPVR*P 331
           +P+S+ SI  T S   PW++ DL P   W        PVR P
Sbjct: 512 LPRSVHSIGTTHSTDPPWKRHDLDPNFGWTSSDYSPDPVRPP 553


>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
          Length = 888

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
 Frame = +1

Query: 367 PPAAIRLKVGLPPWQKTGSCYRSDRFWHQRHRRNSAYGADAEPDSYHIKKTHPQVIEP-- 540
           P   +R    LP    T S +R+D   H  HR +S   +    DS   ++  P  + P  
Sbjct: 327 PTQTVRTVQTLP---NTDSAHRTDSTQHSAHRTDSTQHSAHRTDSTQHRQCAPYGLYPAQ 383

Query: 541 LTQRIQTRNDQRC 579
             + +QT   ++C
Sbjct: 384 TVRTVQTTQHRQC 396


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,495,900
Number of Sequences: 59808
Number of extensions: 517123
Number of successful extensions: 1725
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1722
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)