Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0147.Seq
         (703 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     28   0.33 
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    24   4.0  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           23   7.0  
AF007166-1|AAB62929.1|  360|Anopheles gambiae serine protease 14...    23   7.0  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   9.3  
AJ439060-5|CAD27756.1|  245|Anopheles gambiae putative deoxynucl...    23   9.3  
AF488801-1|AAO49462.1|  246|Anopheles gambiae multisubstrate deo...    23   9.3  

>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 27.9 bits (59), Expect = 0.33
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 267 DKDWQTTSFGRLSSCISRNAFTVSELALMADKSAASG--NTAEG 392
           D+ W   S      C  ++AFTV E +L ++ + A G  N  EG
Sbjct: 139 DRSWLIDSGASSHLCSDKSAFTVMEQSLRSNVTVADGSENRVEG 182


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1222

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 364  PPPAAIRLKVGLPPWQKTGSCYRSDRFWHQRHRRNSA 474
            PPP  +R + GLPP  +T       R + QR  R  A
Sbjct: 1116 PPPIPMRRR-GLPPSPRTVRARHERRLYLQRLYRQRA 1151


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 558 DQERPAMS*FCTTSFDKKTGTAYAKSAGKTMISNVIATNHR 680
           D +   +S +CT S D  T T   KSA  T   +   TN R
Sbjct: 461 DPQVDEVSTYCTYSSDSTTTTTTTKSA-STSSHSTTGTNGR 500


>AF007166-1|AAB62929.1|  360|Anopheles gambiae serine protease 14D
           protein.
          Length = 360

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 169 CCYRLMMKGKTTLPKT 122
           CC  +  KGKT+LP++
Sbjct: 82  CCAGVRSKGKTSLPES 97


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +2

Query: 566 TTSDVIILYNLFR*KDRHSLRKKRRQNHDQ*C-DCD 670
           T SD +   NL      H+L  ++RQ H +   +CD
Sbjct: 594 TRSDALRTLNLLNRSTDHALLAQKRQEHQRLVRECD 629


>AJ439060-5|CAD27756.1|  245|Anopheles gambiae putative
           deoxynucleoside kinase protein.
          Length = 245

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 171 LMGISFKNDHRNLLFALTHEPCKLLIGYPCITDKDWQTTSFGRLSSCISRNAFTVSELA 347
           L+ + +K  HR  +   T+    +L  + C TDK  +       S   +RN F  S LA
Sbjct: 60  LLDLMYKESHRWAMPFQTYVTLTMLDMHTCQTDKSVKLMERSLFS---ARNCFVESMLA 115


>AF488801-1|AAO49462.1|  246|Anopheles gambiae multisubstrate
           deoxyribonucleoside kinaseprotein.
          Length = 246

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 171 LMGISFKNDHRNLLFALTHEPCKLLIGYPCITDKDWQTTSFGRLSSCISRNAFTVSELA 347
           L+ + +K  HR  +   T+    +L  + C TDK  +       S   +RN F  S LA
Sbjct: 60  LLDLMYKESHRWAMPFQTYVTLTMLDMHTCQTDKSVKLMERSLFS---ARNCFVESMLA 115


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 787,716
Number of Sequences: 2352
Number of extensions: 15816
Number of successful extensions: 60
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71504505
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)