Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0147.Seq
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81581-5|CAB04667.2|  646|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z81581-6|CAB04666.1|  679|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AC024772-5|AAF60539.1|  407|Caenorhabditis elegans Hypothetical ...    28   5.6  
AC024772-4|AAL32240.2|  441|Caenorhabditis elegans Hypothetical ...    28   5.6  
U49941-1|AAB53872.1|  609|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>Z81581-5|CAB04667.2|  646|Caenorhabditis elegans Hypothetical
           protein T02E1.3a protein.
          Length = 646

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
 Frame = +1

Query: 316 QEMLSRSANWH*WQINPPPAAIRLKVGLPPWQKTGSCYRSDRFWHQRHRRNSAYGADAEP 495
           ++ L+ S N +  + N P    + K+    W+++GSC   D  W+       A+G D   
Sbjct: 18  RDALTNSTNGN--KPNGPKPKFQTKI-CDHWRRSGSCSYGDACWY-------AHGEDDLR 67

Query: 496 DSYHIKKTHPQVIE-PLTQRIQTRNDQRCHNFVQPLSIKRPAQLTQKAQ 639
               I +++ +  E P T  IQ    +R    V+ L++  P+    K Q
Sbjct: 68  KVVRIDRSNEEENERPATAEIQKSPTKRASTNVKGLTVNIPSNTAFKEQ 116


>Z81581-6|CAB04666.1|  679|Caenorhabditis elegans Hypothetical
           protein T02E1.3b protein.
          Length = 679

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = +1

Query: 370 PAAIRLKVGLPPWQKTGSCYRSDRFWHQRHRRNSAYGADAEPDSYHIKKTHPQVIE-PLT 546
           PA  + K+    W+++GSC   D  W+       A+G D       I +++ +  E P T
Sbjct: 67  PALRKTKI-CDHWRRSGSCSYGDACWY-------AHGEDDLRKVVRIDRSNEEENERPAT 118

Query: 547 QRIQTRNDQRCHNFVQPLSIKRPAQLTQKAQ 639
             IQ    +R    V+ L++  P+    K Q
Sbjct: 119 AEIQKSPTKRASTNVKGLTVNIPSNTAFKEQ 149


>AC024772-5|AAF60539.1|  407|Caenorhabditis elegans Hypothetical
           protein Y40C5A.4a protein.
          Length = 407

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +3

Query: 318 RNAFTVSELALMADKSAASGNTAEGRTSAMAENRIVLSIRSILASKTPSKFC 473
           R AFTVS + L A        T E    + A+NR +   + +   +T   FC
Sbjct: 112 RTAFTVSHITLSAASFLLMAATVERYLQSTADNRTLKLFQILATHRTYVVFC 163


>AC024772-4|AAL32240.2|  441|Caenorhabditis elegans Hypothetical
           protein Y40C5A.4b protein.
          Length = 441

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +3

Query: 318 RNAFTVSELALMADKSAASGNTAEGRTSAMAENRIVLSIRSILASKTPSKFC 473
           R AFTVS + L A        T E    + A+NR +   + +   +T   FC
Sbjct: 112 RTAFTVSHITLSAASFLLMAATVERYLQSTADNRTLKLFQILATHRTYVVFC 163


>U49941-1|AAB53872.1|  609|Caenorhabditis elegans Hypothetical
           protein K10B3.5 protein.
          Length = 609

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/55 (25%), Positives = 21/55 (38%)
 Frame = +1

Query: 370 PAAIRLKVGLPPWQKTGSCYRSDRFWHQRHRRNSAYGADAEPDSYHIKKTHPQVI 534
           P+  RL +   P  K   CY  D F  +   R  A      PD+   +   P ++
Sbjct: 483 PSVHRLPINSVPMYKVIRCYEPDFFSEEMQNRYLARNPPVAPDAAVFRPKMPHIV 537


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,292,325
Number of Sequences: 27780
Number of extensions: 387249
Number of successful extensions: 910
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)