BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= pg--0147.Seq (703 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g19900.1 68415.m02326 malate oxidoreductase, putative similar... 29 2.3 At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 29 3.0 At1g49470.1 68414.m05544 expressed protein contains Pfam profile... 29 3.9 At1g09060.2 68414.m01011 transcription factor jumonji (jmjC) dom... 29 3.9 At1g09060.1 68414.m01010 transcription factor jumonji (jmjC) dom... 29 3.9 At5g25880.1 68418.m03071 malate oxidoreductase, putative similar... 28 5.2 At5g11670.1 68418.m01364 malate oxidoreductase, putative similar... 28 5.2 At1g79750.1 68414.m09304 malate oxidoreductase, putative similar... 28 5.2 At3g61300.1 68416.m06860 C2 domain-containing protein anthranila... 28 6.9 At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff... 28 6.9 At4g35790.2 68417.m05085 phospholipase D delta / PLD delta (PLDD... 27 9.1 At4g35790.1 68417.m05084 phospholipase D delta / PLD delta (PLDD... 27 9.1 At1g01510.1 68414.m00067 C-terminal binding protein (ANGUSTIFOLI... 27 9.1 >At2g19900.1 68415.m02326 malate oxidoreductase, putative similar to NADP-dependent malic enzyme (EC 1.1.1.40) (NADP-ME) (SP:P51615) {Vitis vinifera} Length = 581 Score = 29.5 bits (63), Expect = 2.3 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = -1 Query: 418 LFSAMAEVRPSAVLPLAADLSAINASSLTVKAFLDMQ 308 L+SA+ VRPSA LP+ D+ N L + ++ ++ Sbjct: 203 LYSALGGVRPSACLPVTIDVGTNNEKLLNDEFYIGLR 239 >At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative (UBP16) similar to ubiquitin-specific protease 16 GI:11993477 [Arabidopsis thaliana] Length = 1008 Score = 29.1 bits (62), Expect = 3.0 Identities = 19/75 (25%), Positives = 35/75 (46%) Frame = -1 Query: 601 KEVVQNYDIAGRSWSGYAASMAR*PGDEFF*CDNCQALHLPHMQNFDGVFDAKIDLIDNT 422 +E V + +G S+SG+++S GDE C++ + + + DA + + Sbjct: 184 EEAVSVAETSGSSFSGFSSSPRNDSGDEI---SRCESFSSSESERSESLLDAHVSVEPED 240 Query: 421 ILFSAMAEVRPSAVL 377 FS + E PS +L Sbjct: 241 TCFSTI-EDAPSKLL 254 >At1g49470.1 68414.m05544 expressed protein contains Pfam profile PF04819: Family of unknown function (DUF716) (Plant viral-response family) Length = 302 Score = 28.7 bits (61), Expect = 3.9 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%) Frame = -1 Query: 232 GSCVRAKS----RFRWSFLKLMPINCCYRLMMKGKTTLPKTISSTD 107 G+ +RAK+ +F W ++ I C L GK LPK SS + Sbjct: 231 GAEIRAKALANLQFSWMLSAILIITCALCLKYSGKVVLPKIRSSLE 276 >At1g09060.2 68414.m01011 transcription factor jumonji (jmjC) domain-containing protein contains Pfam domain, PF02373: jmjC domain Length = 930 Score = 28.7 bits (61), Expect = 3.9 Identities = 18/42 (42%), Positives = 21/42 (50%) Frame = -3 Query: 446 QNRSDR*HDPVFCHGGSPTFSRIAAGGGFICHQCQFADRESI 321 +NRS + P+ S S A G ICHQCQ DRE I Sbjct: 178 RNRSHQSTSPMEYSAASTDVS--AESLGEICHQCQRKDRERI 217 >At1g09060.1 68414.m01010 transcription factor jumonji (jmjC) domain-containing protein contains Pfam domain, PF02373: jmjC domain Length = 930 Score = 28.7 bits (61), Expect = 3.9 Identities = 18/42 (42%), Positives = 21/42 (50%) Frame = -3 Query: 446 QNRSDR*HDPVFCHGGSPTFSRIAAGGGFICHQCQFADRESI 321 +NRS + P+ S S A G ICHQCQ DRE I Sbjct: 178 RNRSHQSTSPMEYSAASTDVS--AESLGEICHQCQRKDRERI 217 >At5g25880.1 68418.m03071 malate oxidoreductase, putative similar to NADP-dependent malic enzyme (EC 1.1.1.40) (NADP-ME) (SP:P12628) {Phaseolus vulgaris} Length = 588 Score = 28.3 bits (60), Expect = 5.2 Identities = 11/37 (29%), Positives = 22/37 (59%) Frame = -1 Query: 418 LFSAMAEVRPSAVLPLAADLSAINASSLTVKAFLDMQ 308 L++A+ +RPSA LP+ D+ N L + ++ ++ Sbjct: 210 LYTALGGIRPSACLPITIDVGTNNEKLLNNEFYIGLK 246 >At5g11670.1 68418.m01364 malate oxidoreductase, putative similar to NADP-dependent malic enzyme (EC 1.1.1.40) (NADP-ME) (SP|P12628) {Phaseolus vulgaris} Length = 588 Score = 28.3 bits (60), Expect = 5.2 Identities = 11/37 (29%), Positives = 22/37 (59%) Frame = -1 Query: 418 LFSAMAEVRPSAVLPLAADLSAINASSLTVKAFLDMQ 308 L++A+ +RPSA LP+ D+ N L + ++ ++ Sbjct: 210 LYTALGGIRPSACLPITIDVGTNNEKLLNDEFYIGLK 246 >At1g79750.1 68414.m09304 malate oxidoreductase, putative similar to malate oxidoreductase (NADP-dependent malic enzyme) GB:P34105 (Populus balsamifera subsp. trichocarpa) Length = 646 Score = 28.3 bits (60), Expect = 5.2 Identities = 12/37 (32%), Positives = 22/37 (59%) Frame = -1 Query: 418 LFSAMAEVRPSAVLPLAADLSAINASSLTVKAFLDMQ 308 L++A+ VRPSA LP+ D+ N L + ++ ++ Sbjct: 268 LYTALGGVRPSACLPVTIDVGTNNEKLLNDEFYIGLR 304 >At3g61300.1 68416.m06860 C2 domain-containing protein anthranilate phosphoribosyltransferase (fragment) - Pisum sativum, PIR:T06460 Length = 972 Score = 27.9 bits (59), Expect = 6.9 Identities = 21/73 (28%), Positives = 30/73 (41%) Frame = +1 Query: 307 PAYQEMLSRSANWH*WQINPPPAAIRLKVGLPPWQKTGSCYRSDRFWHQRHRRNSAYGAD 486 P + S N +Q PPP + + LPP S Y++ RF + G + Sbjct: 162 PTNESNHSPRGNQQSFQPQPPPP--QSQTALPPPMMESSLYQAPRFGTP---IPTTMGFN 216 Query: 487 AEPDSYHIKKTHP 525 P Y IK+T P Sbjct: 217 PNPPDYSIKETKP 229 >At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive effector-related contains similarity to SEN1, a positive effector of tRNA-splicing endonuclease [Saccharomyces cerevisiae] gi|172574|gb|AAB63976 Length = 1939 Score = 27.9 bits (59), Expect = 6.9 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = -3 Query: 227 VRQSEEQISMVILEANAHQLLLPTDDEGQ 141 + Q EQIS ++ +AN +Q+L P D G+ Sbjct: 626 IEQLAEQISRLVPKANEYQILKPVDVVGK 654 >At4g35790.2 68417.m05085 phospholipase D delta / PLD delta (PLDDELTA) identical to phospholipase D delta SP: Q9C5Y0 from [Arabidopsis thaliana]; supporting cDNA gi|11761141|dbj|AB031047.1| Length = 857 Score = 27.5 bits (58), Expect = 9.1 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%) Frame = +1 Query: 427 YRSDRFW-HQ-RHRRNSAYGADAEPDSYHIKKTHPQVIEP----LTQRIQTRNDQRCHNF 588 Y+ + W H+ RH R YG + H+ KT + +EP +++ T +++ F Sbjct: 743 YQPNHTWAHKGRHPRGQVYGYRMSLWAEHLGKTGDEFVEPSDLECLKKVNTISEENWKRF 802 Query: 589 VQP 597 + P Sbjct: 803 IDP 805 >At4g35790.1 68417.m05084 phospholipase D delta / PLD delta (PLDDELTA) identical to phospholipase D delta SP: Q9C5Y0 from [Arabidopsis thaliana]; supporting cDNA gi|11761141|dbj|AB031047.1| Length = 868 Score = 27.5 bits (58), Expect = 9.1 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%) Frame = +1 Query: 427 YRSDRFW-HQ-RHRRNSAYGADAEPDSYHIKKTHPQVIEP----LTQRIQTRNDQRCHNF 588 Y+ + W H+ RH R YG + H+ KT + +EP +++ T +++ F Sbjct: 754 YQPNHTWAHKGRHPRGQVYGYRMSLWAEHLGKTGDEFVEPSDLECLKKVNTISEENWKRF 813 Query: 589 VQP 597 + P Sbjct: 814 IDP 816 >At1g01510.1 68414.m00067 C-terminal binding protein (ANGUSTIFOLIA) nearly identical to C-terminal binding protein ANGUSTIFOLIA [Arabidopsis thaliana] GI:15408535; contains Pfam profile PF02826: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Length = 636 Score = 27.5 bits (58), Expect = 9.1 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = -2 Query: 318 LICRMIICQSWWFASLYPLCRG 253 L+ R + S W SL PLCRG Sbjct: 136 LLSRHALSASGWLGSLQPLCRG 157 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,208,933 Number of Sequences: 28952 Number of extensions: 355508 Number of successful extensions: 908 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 872 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 908 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1506636208 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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