Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0146.Seq
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    26   5.1  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    26   6.8  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   6.8  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    25   9.0  

>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 468 NQIKTKRTWQYCVLKYFHSL 527
           N+I +  TW + ++ YFH +
Sbjct: 81  NKINSTNTWNFALIDYFHDM 100


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +3

Query: 324 RVVYYKSYYIFLYTVLATLLLSREIV 401
           RV+YYK +++ L T+++  L S +++
Sbjct: 379 RVLYYKDFFMDLSTIISNFLPSMKLL 404


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 308 LCSHTHITPTHLHETHGSWESFLFG 234
           + + TH   T  + THG W  ++FG
Sbjct: 676 MVTQTHSEGTFSNSTHGDWLIYVFG 700


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -2

Query: 729 STSNCQCCRRETKVSKIVCDSLYFSSLARR 640
           +T  C  CRR+   +K++C  +   S  ++
Sbjct: 239 ATQKCPVCRRKVHPNKVICLEMMLGSQKKK 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,518
Number of Sequences: 5004
Number of extensions: 53039
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)