Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0146.Seq
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0266 + 2151485-2151592,2151891-2152096,2152302-2152488           29   4.1  
07_01_1197 - 11372764-11373174                                         29   5.4  
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671...    29   5.4  

>08_01_0266 + 2151485-2151592,2151891-2152096,2152302-2152488
          Length = 166

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 147 SNSIVSFSFSNGHSLNLD*VWCEVRAHIPQYYMLHTNT*AYK 22
           SN   + SF+ GH+L+L  + C V A +   Y +  N  AY+
Sbjct: 123 SNPRRNCSFAQGHTLDLGGILCFVHAGVTVAYYVTANAAAYE 164


>07_01_1197 - 11372764-11373174
          Length = 136

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 747 SKHVLDSTSNCQCCRRETKVSKIVCDSLYFS 655
           +K VL  T++ QCC R +   K++C  L FS
Sbjct: 105 AKDVL-RTNDLQCCSRPSSPGKLICKKLGFS 134


>04_04_0965 -
           29762388-29762564,29764272-29766361,29766567-29767170,
           29768395-29768637,29768704-29770203
          Length = 1537

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 314 CALCSHTHITPTHLHETHGS 255
           CAL SH+   P HL E HGS
Sbjct: 825 CALDSHSPAVPLHLVELHGS 844


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,442,504
Number of Sequences: 37544
Number of extensions: 297407
Number of successful extensions: 544
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)