Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0145.Seq
         (416 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    23   1.6  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   3.6  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   6.4  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   6.4  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     20   8.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    20   8.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           20   8.4  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    20   8.4  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    20   8.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    20   8.4  

>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 384 SFPPIVLLGVLSKSFTTCS 328
           S+ PIV  G++   F TC+
Sbjct: 160 SYCPIVTTGIIKIQFATCA 178


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +3

Query: 93  ESIDKVMAAGEHTINNKKVDPKKAKARHG 179
           E I +   +  H+++N     KK+  +HG
Sbjct: 242 ELIRQTHKSPSHSVDNSNSSEKKSSIQHG 270


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +2

Query: 347 LLKTPKRTIGGKEVDVKRATPKP 415
           +LK   +T+GG   ++    P+P
Sbjct: 374 ILKAIHQTLGGSSNEIVEPVPQP 396


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 363 LGVLSKSFTTCSDSN 319
           LGV  +SFT  S SN
Sbjct: 264 LGVYGRSFTLASASN 278


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 404 LHASHRPPFH 375
           LH+ H PP H
Sbjct: 89  LHSHHGPPIH 98


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 404 LHASHRPPFH 375
           LH+ H PP H
Sbjct: 89  LHSHHGPPIH 98


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 404 LHASHRPPFH 375
           LH+ H PP H
Sbjct: 89  LHSHHGPPIH 98


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 404 LHASHRPPFH 375
           LH+ H PP H
Sbjct: 89  LHSHHGPPIH 98


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 2   SIR*NREY*CKDRSK 46
           SIR NR+Y CK + +
Sbjct: 65  SIRRNRQYVCKAKDE 79


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 2   SIR*NREY*CKDRSK 46
           SIR NR+Y CK + +
Sbjct: 65  SIRRNRQYVCKAKDE 79


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,205
Number of Sequences: 336
Number of extensions: 1822
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9174063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)