Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0145.Seq
(416 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 79 3e-16
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 39 4e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 36 0.003
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 35 0.004
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 35 0.006
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 34 0.010
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 33 0.013
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 33 0.018
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.024
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 33 0.024
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.054
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 31 0.054
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 31 0.054
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 31 0.095
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 30 0.13
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 30 0.17
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 29 0.22
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 29 0.22
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 29 0.29
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 29 0.29
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 0.51
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 28 0.67
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 28 0.67
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 0.88
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 27 0.88
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 27 1.2
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 27 1.2
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 2.7
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 2.7
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 26 2.7
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 25 3.6
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 25 3.6
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 4.7
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|... 25 6.2
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 6.2
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 24 8.2
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p... 24 8.2
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac... 24 8.2
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr... 24 8.2
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 24 8.2
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 24 8.2
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 79.0 bits (186), Expect = 3e-16
Identities = 37/87 (42%), Positives = 57/87 (65%), Gaps = 5/87 (5%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH--- 176
+GE+ V D TGRSRGF F+ FK P+ +++VM+ EH ++ K +DPK+A R
Sbjct: 186 FGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK-EHHLDGKIIDPKRAIPREEQE 244
Query: 177 --GKIFVGGLSSEISDDEIRNFFSEFG 251
K+FVGG+ + +++E RNFF++FG
Sbjct: 245 KTAKMFVGGVPGDCTEEEFRNFFNQFG 271
Score = 50.0 bits (114), Expect = 1e-07
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = +2
Query: 257 LEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
L+ + DK + +GF F+T+E+E V + P TI GK V+VKRATPK
Sbjct: 274 LDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 39.1 bits (87), Expect = 3e-04
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 164
+G + + D +TGR RGF F+ ++ +++ M+ TI+ K V+ K+A
Sbjct: 270 FGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRA 322
Score = 37.5 bits (83), Expect = 8e-04
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = +3
Query: 177 GKIFVGGLSSEISDDEIRNFFSEFG 251
GK+F+GGL+ E +DD +R++F +FG
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFG 187
Score = 37.1 bits (82), Expect = 0.001
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = +2
Query: 278 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
D T + +GF F+TF++ + VN+++ + + + GK +D KRA P+
Sbjct: 197 DSTTGRSRGFGFLTFKNPKCVNEVM-SKEHHLDGKIIDPKRAIPR 240
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 38.7 bits (86), Expect = 4e-04
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 134
G+I+SI + TDP +GR +GF ++ F +S K + H I
Sbjct: 390 GDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFI 431
Score = 34.7 bits (76), Expect = 0.006
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVD 152
YG I V D +GRS+G+ ++ F+ PE+ +AA G I+ + V+
Sbjct: 286 YGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVN 335
Score = 25.0 bits (52), Expect = 4.7
Identities = 11/50 (22%), Positives = 22/50 (44%)
Frame = +2
Query: 263 VEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
+ +P D + KGF ++TF ++ I G+ + +TP+
Sbjct: 395 IRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPR 444
Score = 24.2 bits (50), Expect = 8.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 183 IFVGGLSSEISDDEIRNFFSEFGT 254
+FVG LS + D + F E+GT
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGT 288
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 35.9 bits (79), Expect = 0.003
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV--------DPKKA 164
G + SI V D T RS G+A++ F E +K + +T+ + DP
Sbjct: 104 GPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLR 163
Query: 165 KARHGKIFVGGLSSEISDDEIRNFFSEFG 251
K G +F+ L I + + + FS FG
Sbjct: 164 KMGTGNVFIKNLDPAIDNKALHDTFSAFG 192
Score = 33.5 bits (73), Expect = 0.013
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 113
A+G I S + TD G+S+GF F+ + PE +K +
Sbjct: 386 AFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAV 421
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 35.1 bits (77), Expect = 0.004
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 125
G I+ + + DP T +GFA+I FK +DK + E
Sbjct: 294 GSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNE 332
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 34.7 bits (76), Expect = 0.006
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPES--IDKVMAAGEHTI-NNKKVDPKKAKARHG 179
G++ S+ + TD +GR +G+AF+ F P++ I K + HTI +K++ + G
Sbjct: 116 GQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALKF-HHTIYKERKINIELTAGGGG 174
Query: 180 K 182
K
Sbjct: 175 K 175
Score = 26.6 bits (56), Expect = 1.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 263 VEMPFDKTKNQRKGFCFITF 322
V +P DKT ++KG+ F+ F
Sbjct: 121 VRIPTDKTSGRQKGYAFVEF 140
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 33.9 bits (74), Expect = 0.010
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +3
Query: 102 DKVMAAGEHTINNKKVD---PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGT 254
D+V E T +KK P+ ++ +FV G++S + +DE++ FS+FGT
Sbjct: 73 DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGT 126
Score = 27.1 bits (57), Expect = 1.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPE 95
+G + + + +P T SRGF F+ F E
Sbjct: 124 FGTVTHVRIMREPVTKASRGFGFLSFSTVE 153
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 33.5 bits (73), Expect = 0.013
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 153 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 251
P+ A + +FVGGLS +S++E++ F FG
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFG 327
Score = 29.1 bits (62), Expect = 0.29
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVF 83
Y +S + TDP T SRG+ F+ F
Sbjct: 210 YNSCKSAKIMTDPQTNVSRGYGFVRF 235
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 33.1 bits (72), Expect = 0.018
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 6 YGE-IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 173
+GE + SI + DP T RSRGF ++ F+ +++ +A + + V A+ R
Sbjct: 114 FGEGVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGEDLMGRPVRITVAEPR 170
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 32.7 bits (71), Expect = 0.024
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 132 INNKKVD-PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 251
+NN K+ P + + I+VG + S +SD+EI FS++G
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYG 41
Score = 27.5 bits (58), Expect = 0.88
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 161
+G I S + PN+G S+G+ F+ F+ E+ + T+N V K+
Sbjct: 407 FGSILSSMLACYPNSGISKGYGFVAFRQIEA----AVRAKDTLNGMMVGKKR 454
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 32.7 bits (71), Expect = 0.024
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFK 86
YG IE I V + TG+S G+AF+VF+
Sbjct: 123 YGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 31.5 bits (68), Expect = 0.054
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 149
G I+ V T+P TG +RG+ F+ F E D AA E + NKK+
Sbjct: 29 GPIKHAVVVTNPETGENRGYGFVTFSMLE--DAQRAAKE--LKNKKL 71
Score = 25.0 bits (52), Expect = 4.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 183 IFVGGLSSEISDDEIRNFFSEFG 251
+FV L+ + D++ NFFS+ G
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVG 29
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 31.5 bits (68), Expect = 0.054
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 123 EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 251
E TI K + K + + G ++VG L + ++R +FS+FG
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFG 129
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 31.5 bits (68), Expect = 0.054
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPES 98
+GE IN+ D TG+S+GFAF+ ++ S
Sbjct: 54 FGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
Score = 27.5 bits (58), Expect = 0.88
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 183 IFVGGLSSEISDDEIRNFFSEFG 251
I++G L ++++D+I FSEFG
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFG 55
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 30.7 bits (66), Expect = 0.095
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFGT 254
+I+VGGLSS I ++ + FS FG+
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGS 30
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 30.3 bits (65), Expect = 0.13
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPKRTIGGKEVDV 394
+V MP DK N KGF +I F +++ V L+ + G+ + V
Sbjct: 351 QVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHV 396
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 29.9 bits (64), Expect = 0.17
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 107
+G+I S V D TG S +AFI F ES++K
Sbjct: 267 FGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 29.5 bits (63), Expect = 0.22
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 131
G+I + + T +TG+ +GF F+ F ++ K M G ++
Sbjct: 252 GQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELGHNS 292
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 29.5 bits (63), Expect = 0.22
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +3
Query: 93 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTS*KWRC 272
+ ++ + A H + P + +A ++FVG LS+ EIR+ F GT K
Sbjct: 17 DQVEASVDAAVHASAEQSNTPAQ-QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
Query: 273 PLTKQRTKER 302
P + R R
Sbjct: 76 PFRRVRRGTR 85
Score = 24.6 bits (51), Expect = 6.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 63 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 161
G AF+ F E +DK + T+N K +D ++
Sbjct: 90 GIAFVTFNNQEDVDKAI----ETLNGKTLDDRE 118
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 29.1 bits (62), Expect = 0.29
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 257 LEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT-IGGKEVDVKRATP 409
+ V M +D+ + +G C + FE+ Q D KT + T + G E+ + + +P
Sbjct: 111 IRVIMNYDRA-GRSEGSCDVYFETSQDAEDAQKTLQSTNLKGSEIQISKKSP 161
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 29.1 bits (62), Expect = 0.29
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVF 83
+G I+ + + D TGR++GFAF+ +
Sbjct: 225 FGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 28.3 bits (60), Expect = 0.51
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +3
Query: 174 HGKIFVGGLSSEISDDEIRNFFSEF 248
H ++FVG L ++++D+ + FSE+
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEY 53
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 27.9 bits (59), Expect = 0.67
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 183 IFVGGLSSEISDDEIRNFFSEFGTS*KWRCPLTK 284
+FVGGL+S +S+ +++ F FG + P K
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK 332
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 27.9 bits (59), Expect = 0.67
Identities = 14/65 (21%), Positives = 29/65 (44%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIF 188
GE+E V +P + ++F K+ A +++ +++DP K A +
Sbjct: 351 GEVEQSLVCNEPQSTDFNDIQRLLFSNISENTKLRLAALYSLRFERIDPAKVSALQQMLI 410
Query: 189 VGGLS 203
GG++
Sbjct: 411 AGGVN 415
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 0.88
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 60 RGFAFIVFKAPESIDKVMAAGEHTINNKK 146
RGFA IVF A S ++V G H +N+ K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 27.5 bits (58), Expect = 0.88
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKVMAAGEHTINNKKVDPKKAKARHGK 182
+G I+S + + P+T S+G+ F+ F P E++ + K++ A+ R +
Sbjct: 444 FGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKREDR 503
Score = 24.6 bits (51), Expect = 6.2
Identities = 20/71 (28%), Positives = 29/71 (40%)
Frame = +3
Query: 111 MAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTS*KWRCPLTKQR 290
M A E K KK + I+VG L S ++ F FG K+ L++++
Sbjct: 1 MIALEKLSEKNKRSTKKCEI---SIYVGNLPSTCQSSDLHELFEPFGNFSKFHM-LSRKK 56
Query: 291 TKERASVSSHL 323
K S S L
Sbjct: 57 NKSTDSKSPTL 67
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.1 bits (57), Expect = 1.2
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTINNK 143
+G++ S + + G S+GF F FK P + ++ G+ T NK
Sbjct: 333 FGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGLDGKDTYGNK 380
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.1 bits (57), Expect = 1.2
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = +3
Query: 147 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGT 254
+ P K +F+GG++ + + +R+ F FG+
Sbjct: 396 IPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGS 431
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 25.8 bits (54), Expect = 2.7
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +2
Query: 269 MPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPKRTIGGKE--VDVKR 400
MP K KG+C+I + +Q N + K + G+E V +KR
Sbjct: 130 MPIYKKSELNKGYCYIEYVYHDQAANAVDKMNNAELDGEELFVSIKR 176
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 2.7
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -1
Query: 167 FSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYINTLYFTV 6
F+LL L + GV Y ++ + H+ G P WICL+ +F +
Sbjct: 85 FALLSSQPLCIVGVTGPITVFNYTVYDIMHDRGTPYFPFLCWICLWSMIFHFII 138
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.8 bits (54), Expect = 2.7
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Frame = -1
Query: 290 SLFCQRASPLLRSSKFTEEVSD--FII*DFTAESSDKNLPMSCFSLLWVYFLVVDGVFTS 117
S+ QR + S T + D + I +++ E + + L M C +++ F +F S
Sbjct: 1161 SIVQQRVQQGSKVSALTALIPDVTYNISNYSDEETTQ-LAMDCLAVMAKRFSASPELFIS 1219
Query: 116 SHDLVY*LWGLKHNEGKPS*SACVWICLYINTL 18
++V +GLK++ SA V I + NTL
Sbjct: 1220 PIEVVSGPYGLKNSARDVQVSAIVCITVLTNTL 1252
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 3.6
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 116
G + + D +GRS+G A++ F +S+ +A
Sbjct: 264 GPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA 299
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 25.4 bits (53), Expect = 3.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 183 IFVGGLSSEISDDEIRNFFSEFG 251
+F+G L + I++DEIR FG
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFG 230
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.0 bits (52), Expect = 4.7
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP-----KRTIGGKEVDVKRAT 406
+ E+P D ++ R +S+ N +LKTP K+T+ K++ AT
Sbjct: 43 DAELPQDAKEDLRPTETLTPLKSKAAQNGILKTPGTLQIKKTVNFKDISKDAAT 96
>SPCC11E10.04 |||mitochondrial ATPase expression protein
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 443
Score = 24.6 bits (51), Expect = 6.2
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -1
Query: 269 SPLLRSSKFTEEVSDFII*DFTAESSDKNL-PMSCFSLLWVYFLVVDGVFTSSHDLVY*L 93
SP R S TE VS ++ + + +L P S + L DG +DL+ +
Sbjct: 188 SPAFRGSPVTEPVSGKMLDMIEVDFPNYDLVPNSTTYDYLMVGLSRDGKIREIYDLIDTV 247
Query: 92 WGLKHN 75
WG+ N
Sbjct: 248 WGINEN 253
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 24.6 bits (51), Expect = 6.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAP 92
G + +++ PN GRS+G A I+F P
Sbjct: 80 GPCKRVSLAYGPN-GRSKGIATIIFSRP 106
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 24.2 bits (50), Expect = 8.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2
Query: 160 FFGSTFLLLMVCSPAAMTLSIDSGALNTMKANPRDLPVFGSV 35
F+G T LL+ + A++ S L + +P D F SV
Sbjct: 187 FWGGTHLLMQLKKYASLEQSSHESQLYLVNPSPEDTVAFQSV 228
>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 535
Score = 24.2 bits (50), Expect = 8.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 348 CLRLPKEQLVERRSM*SVQHQNQ 416
C RLPKE L+ R + +Q NQ
Sbjct: 454 CTRLPKELLMLGRCLMLIQKNNQ 476
>SPBC1539.09c |trp1||anthranilate synthase component
II|Schizosaccharomyces pombe|chr 2|||Manual
Length = 759
Score = 24.2 bits (50), Expect = 8.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 84 KAPESIDKVMAAGEHTINNKKVDPKKA 164
K S+ K ++ HT N K + PKKA
Sbjct: 570 KVDLSVAKEISHFVHTTNRKHISPKKA 596
>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 747
Score = 24.2 bits (50), Expect = 8.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 311 NRSPFFGSLFCQRASPLLRSSKFTEEVSD 225
N +P ++ C+R SPL S + TE + +
Sbjct: 25 NPNPGLRNILCRRYSPLALSKEVTEALKN 53
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 24.2 bits (50), Expect = 8.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 183 IFVGGLSSEISDDEIRNFFSEFG 251
+F+G L S + EI F +FG
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFG 323
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 24.2 bits (50), Expect = 8.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 166 LAFFGSTFLLLMVCSPAAMTLSIDSGALN 80
+AFF + + +M C+ + T SI +G LN
Sbjct: 56 VAFFEAPSVWIMTCAFSPSTKSIAAGGLN 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,734,866
Number of Sequences: 5004
Number of extensions: 32984
Number of successful extensions: 177
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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