Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0145.Seq
(416 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 71 5e-13
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 57 5e-09
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 9e-09
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 54 6e-08
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 51 4e-07
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 9e-06
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 46 1e-05
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013) 46 2e-05
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 5e-05
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 9e-05
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.003
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 38 0.004
SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 36 0.013
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 35 0.023
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.023
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 35 0.031
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 34 0.041
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.054
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.072
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.095
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 33 0.095
SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.17
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.22
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.22
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.22
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.22
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 31 0.29
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 31 0.29
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.29
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.38
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.50
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.67
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 30 0.88
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 29 1.2
SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 29 2.0
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 29 2.0
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 28 2.7
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 28 2.7
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0) 28 3.6
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 27 4.7
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.7
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 27 4.7
SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096) 27 4.7
SB_5101| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_15594| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_16524| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 70.5 bits (165), Expect = 5e-13
Identities = 33/82 (40%), Positives = 54/82 (65%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKI 185
+GE++ V DP T RSRGF F+ FK P+++D V+ +G +++D KK KI
Sbjct: 131 FGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNSGA-----QELDGKKMVTTTKKI 185
Query: 186 FVGGLSSEISDDEIRNFFSEFG 251
F+GGLS+ S+++++ +FS+FG
Sbjct: 186 FIGGLSTNTSEEDMKKYFSQFG 207
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 57.2 bits (132), Expect = 5e-09
Identities = 32/80 (40%), Positives = 42/80 (52%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKI 185
YGE+ +++K D TGR RGFAF+ FK D + I K R KI
Sbjct: 52 YGELVGVDIKMDALTGRPRGFAFVQFKHQSEADAIDPKPAAPIG------KPPHLRVKKI 105
Query: 186 FVGGLSSEISDDEIRNFFSE 245
FVGGL E SD++IR +F +
Sbjct: 106 FVGGLKPETSDEKIREYFGK 125
Score = 53.2 bits (122), Expect = 8e-08
Identities = 22/51 (43%), Positives = 35/51 (68%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
E+E + + N+R+GFCF++F+SE V+ + +T I G +V+VKRA PK
Sbjct: 132 EIEYITEHSSNRRRGFCFVSFDSEDTVDKICETQFHNIEGNKVEVKRALPK 182
Score = 44.0 bits (99), Expect = 5e-05
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 164
AY ++ I T+ ++ R RGF F+ F + +++DK+ H I KV+ K+A
Sbjct: 126 AYAPVKEIEYITEHSSNRRRGFCFVSFDSEDTVDKICETQFHNIEGNKVEVKRA 179
Score = 33.9 bits (74), Expect = 0.054
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +3
Query: 177 GKIFVGGLSSEISDDEIRNFFSEFG 251
GK+FVGGLS E + + ++ +FS++G
Sbjct: 29 GKLFVGGLSYETTKESLKEYFSKYG 53
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 56.4 bits (130), Expect = 9e-09
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD-----PKKAKA 170
+GEI+ VK DPNT RSRGF F+ FK E V++ H I + + PK+
Sbjct: 138 FGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVLST-SHRIQGRLCEVRLPRPKEELN 196
Query: 171 RHGKIFVGGLSSEISDDEIRNFFSEFG 251
K+FVG L ++ + +F++FG
Sbjct: 197 VPKKLFVGRLPESTTEKTLMEYFAQFG 223
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 53.6 bits (123), Expect = 6e-08
Identities = 23/75 (30%), Positives = 50/75 (66%), Gaps = 11/75 (14%)
Frame = +3
Query: 51 GRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK-----------AKARHGKIFVGG 197
GRSRGF F+ +++ +S+++V+ +H +++++++PK+ A ++ KIFVGG
Sbjct: 86 GRSRGFGFVTYESSDSVNEVLKKKDHVLDDREIEPKRSVPRDESGAPEAMSKTRKIFVGG 145
Query: 198 LSSEISDDEIRNFFS 242
L+S +++I+ +F+
Sbjct: 146 LASTTVEEDIKEYFN 160
Score = 42.7 bits (96), Expect = 1e-04
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +3
Query: 9 GEIESINVKTD-PNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAK 167
GE+ +++K D N R RGFAF+ F E ++KV A H I K+ + KKA+
Sbjct: 169 GEVIDVDLKRDRDNPKRIRGFAFVTFDNDEIVEKVCAMKYHEIRMKQCEVKKAE 222
Score = 39.1 bits (87), Expect = 0.001
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +2
Query: 281 KTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
K + +GF F+T+ES VN++LK + +E++ KR+ P+
Sbjct: 83 KRDGRSRGFGFVTYESSDSVNEVLKKKDHVLDDREIEPKRSVPR 126
Score = 35.5 bits (78), Expect = 0.018
Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +2
Query: 257 LEVEMPFDKTKNQR-KGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
++V++ D+ +R +GF F+TF+++++V + I K+ +VK+A P+
Sbjct: 172 IDVDLKRDRDNPKRIRGFAFVTFDNDEIVEKVCAMKYHEIRMKQCEVKKAEPQ 224
Score = 30.7 bits (66), Expect = 0.50
Identities = 10/25 (40%), Positives = 21/25 (84%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFGT 254
KIF+GGL+ +++ ++++FS++GT
Sbjct: 51 KIFIGGLNWNTTEEGLKDYFSQWGT 75
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 50.8 bits (116), Expect = 4e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKI 185
+GE+ES+ + G SR + F++FK + K + H IN K VD K++ I
Sbjct: 103 FGEVESVRIMRT-FLGYSRNYGFVLFK-DDGPSKEVLKKSHVINGKTVDVGKSR-NFRVI 159
Query: 186 FVGGLSSEISDDEIRNFFSEFG 251
+VGGL S ++ +R F +FG
Sbjct: 160 YVGGLPSHFTEQTVREHFKKFG 181
Score = 38.3 bits (85), Expect = 0.003
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 149
YG++ +++ TD TG+S+G + + P +++K++ H I +V
Sbjct: 342 YGQVAKVHILTDRETGKSKGCGVVKLRHPGTVNKILEEPVHVIGKSQV 389
Score = 32.3 bits (70), Expect = 0.17
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 135 NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 251
N+ PK + +FVGGL+S ++ ++++F +FG
Sbjct: 66 NSTLPSPKDIEKNSRSVFVGGLASGTDEEGLKDYFEQFG 104
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 46.4 bits (105), Expect = 9e-06
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 21/85 (24%)
Frame = +3
Query: 60 RGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA---------------------KARH 176
+GF F+ F+ P +I+ V+A H ++ K +DPK A A
Sbjct: 142 KGFGFVTFRDPATIESVLAKKPHILDGKTIDPKPAVPRGPGQQAQTGAVMGGPQRGSAND 201
Query: 177 GKIFVGGLSSEISDDEIRNFFSEFG 251
GK+F+GGL+ ++++++ +FS +G
Sbjct: 202 GKVFIGGLAFGTTEEDLKEYFSTYG 226
Score = 34.3 bits (75), Expect = 0.041
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 275 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
F++ KGF F+TF + +L + GK +D K A P+
Sbjct: 134 FERRARMLKGFGFVTFRDPATIESVLAKKPHILDGKTIDPKPAVPR 179
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 46.0 bits (104), Expect = 1e-05
Identities = 25/85 (29%), Positives = 45/85 (52%)
Frame = +3
Query: 48 TGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEI 227
+G+S+GFAF+ + E+++ V+ +H I+N V +K + + K+ + + S I + +I
Sbjct: 79 SGKSKGFAFVRLRKKEAVESVLGRDDHVIDNSDVSMEK-QDTYRKVILKNIPSSIGESQI 137
Query: 228 RNFFSEFGTS*KWRCPLTKQRTKER 302
FS G P +TKER
Sbjct: 138 LEHFSSSGEIASVYIP-ENLKTKER 161
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 281 KTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEV 388
KTK +RKG C +TF S +++K K I G ++
Sbjct: 157 KTK-ERKGHCIVTFASVTEAFEVVKKRKHHIHGYDI 191
>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
Length = 665
Score = 45.6 bits (103), Expect = 2e-05
Identities = 21/45 (46%), Positives = 27/45 (60%)
Frame = +3
Query: 39 DPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 173
D T R RGF F+ F++ S DK H INNKKV+ KKA+ +
Sbjct: 5 DKATQRHRGFGFVTFESENSADKACDTQYHLINNKKVEVKKAQPK 49
Score = 44.4 bits (100), Expect = 4e-05
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +2
Query: 275 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
FDK + +GF F+TFESE + T I K+V+VK+A PK
Sbjct: 4 FDKATQRHRGFGFVTFESENSADKACDTQYHLINNKKVEVKKAQPK 49
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 44.0 bits (99), Expect = 5e-05
Identities = 18/49 (36%), Positives = 32/49 (65%)
Frame = +2
Query: 257 LEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 403
LE++M D+ N+ KG+CF+ F +E +V+ L + GK+V++K+A
Sbjct: 133 LEIKMVRDRETNKFKGYCFVNFPNEHIVDKLYLVRHIQVKGKDVEMKKA 181
Score = 41.1 bits (92), Expect = 4e-04
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Frame = +3
Query: 12 EIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAAGE-HTINNKKVDPKKAKARHG-- 179
++ S+++ P G+SR F F+ F + ID ++ E H+I+NK+V+ K+A R
Sbjct: 38 DVSSVSLAKTPE-GKSRKFCFVEFSNGSDIIDNIVFNFESHSIDNKQVEVKRAMPRDDPN 96
Query: 180 --------KIFVGGLSSEISDDEIR 230
K+F+GGL E S+++++
Sbjct: 97 ELAHVRTKKLFIGGLKDEHSEEDVK 121
Score = 28.3 bits (60), Expect = 2.7
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEF 248
K+FVGGL+ + +++ +R +F F
Sbjct: 9 KLFVGGLNEDTTEETVRAYFKSF 31
Score = 28.3 bits (60), Expect = 2.7
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +3
Query: 24 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 164
I + D T + +G+ F+ F +DK+ + K V+ KKA
Sbjct: 135 IKMVRDRETNKFKGYCFVNFPNEHIVDKLYLVRHIQVKGKDVEMKKA 181
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 43.2 bits (97), Expect = 9e-05
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 15/91 (16%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVF---KAPESI--DKVMAAGEHTINNKKVDPKKAK 167
AYGE+ + V D T +SRGF ++ F K ++ DKV G H I+ K+V+ K+A
Sbjct: 36 AYGELTDVVVICDSATKKSRGFGYVTFADYKVTRNVLKDKV-ENGAHRIDGKEVEVKRAI 94
Query: 168 ARHG----------KIFVGGLSSEISDDEIR 230
R KIFVGGL + + ++I+
Sbjct: 95 PRDDNSATSHEKTKKIFVGGLPEDATKEDIQ 125
Score = 34.7 bits (76), Expect = 0.031
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +2
Query: 278 DKTKNQRKGFCFITFESEQVVNDLLKTPKRT----IGGKEVDVKRATPK 412
D + +GF ++TF +V ++LK I GKEV+VKRA P+
Sbjct: 48 DSATKKSRGFGYVTFADYKVTRNVLKDKVENGAHRIDGKEVEVKRAIPR 96
Score = 33.9 bits (74), Expect = 0.054
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 278 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
D+TK+ +GF F+ +E ++L K + GK V+ K+ATP+
Sbjct: 147 DETKH--RGFAFVELNNEDQADELCCVKKIHVKGKMVEAKKATPR 189
Score = 29.9 bits (64), Expect = 0.88
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
K+FVGGL+ E +++ +R +F +G
Sbjct: 15 KLFVGGLNRETTNETLREYFEAYG 38
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 54 RSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 173
+ RGFAF+ + D++ + + K V+ KKA R
Sbjct: 150 KHRGFAFVELNNEDQADELCCVKKIHVKGKMVEAKKATPR 189
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 41.9 bits (94), Expect = 2e-04
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK----AKAR- 173
GEI ++ DP TG ++GFAF F S + + T+N+K + P + K+R
Sbjct: 177 GEIREFRLQMDPATGLNKGFAFCTFTEQTSAYQAIT----TLNDKDIRPGRRLAICKSRS 232
Query: 174 HGKIFVGGLSSEISDDEIRNFFSEFGT 254
+ ++FV G+ S +EI FS+ T
Sbjct: 233 NSRLFVKGIPKRKSKEEIFQEFSKVTT 259
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 41.5 bits (93), Expect = 3e-04
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNK--KVD---PKKAKA 170
G + S + D TG+S G+AF+ + P+ +K V + NK KV P +
Sbjct: 51 GNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFARPSSTEI 110
Query: 171 RHGKIFVGGLSSEISDDEIRNFFSEFG 251
++ +++ GL ++ ++E+ F FG
Sbjct: 111 KNANLYISGLPKDMKEEEVEALFKPFG 137
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 38.3 bits (85), Expect = 0.003
Identities = 19/58 (32%), Positives = 34/58 (58%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 182
G+I S+ V TDP G+S+GF F+ F+ PE ++ + + +N K++ ++ A K
Sbjct: 133 GKIVSLKVMTDPE-GKSKGFGFVSFETPEEAEEAV----NVLNGKEIGGRRLWAGRAK 185
Score = 32.7 bits (71), Expect = 0.12
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 113
YG I S V D + G S+GF F+ F +PE K +
Sbjct: 235 YGTISSAKVMKD-DKGNSKGFGFVCFSSPEEATKAV 269
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 37.5 bits (83), Expect = 0.004
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3
Query: 18 ESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 113
E++N+ TD TGR RGF F+ F + E ++K +
Sbjct: 123 EAVNIITDRETGRPRGFGFVTFGSKEEMEKAI 154
>SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 37.5 bits (83), Expect = 0.004
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESI 101
G +E++ + TD NTG+ R F F+ F +P S+
Sbjct: 481 GPLENVRIPTDKNTGQQRSFGFVEFSSPVSV 511
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 35.9 bits (79), Expect = 0.013
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV--DPK 158
YG IE +++ TG+S+GF ++ ++ ES + + AG H I+ K V +PK
Sbjct: 86 YGAIEDLSI-IRTQTGKSKGFGYVTYENAESAQRAL-AGTHIIDGKWVIAEPK 136
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 35.1 bits (77), Expect = 0.023
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 113
YG ++++++ TD SRGFA++ + PE +K +
Sbjct: 1180 YGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKAL 1215
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 263 VEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPKRTIGGKEVDVKRATP 409
V++P D+T N +GF ++ + + E+ L I G+E+ V+ P
Sbjct: 1186 VDLPTDRTNNLSRGFAYVEYVDPEECEKALKHMDGGQIDGQEIAVQSVLP 1235
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 35.1 bits (77), Expect = 0.023
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 21 SINVKTDPNTGRSRGFAFIVFKAPESIDKVM 113
S+ V TD TGR RGF F+ F + + +DK +
Sbjct: 37 SVKVITDRETGRPRGFGFVTFGSEDEMDKAI 67
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 257 LEVEMPFDKTKNQRKGFCFITFESEQVVNDLL-KTPKRTIGGKEVDVKRATPK 412
L V++ D+ + +GF F+TF SE ++ + K + G+ + V +A P+
Sbjct: 36 LSVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKVNKAQPR 88
Score = 28.3 bits (60), Expect = 2.7
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 12 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKV---MAAGEHTINNKKVDPKKAKARHGK 182
++ + V +D T R RGFAF+ F + ++++ + E + KV+ +++ + G
Sbjct: 254 DVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINELDGQEFDGRSMKVNQARSREQRGG 313
Query: 183 IFVGGLSS 206
GG S
Sbjct: 314 GRGGGYRS 321
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/53 (22%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 248 WNFLEVEMPFDKTKNQRKGFCFITFESEQVVNDLL-KTPKRTIGGKEVDVKRA 403
++ ++V++ D+ + +GF F+TF S++ + D + + + G+ + V +A
Sbjct: 253 YDVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINELDGQEFDGRSMKVNQA 305
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 34.7 bits (76), Expect = 0.031
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
K+FVGG+ E DD +R FF++FG
Sbjct: 11 KLFVGGIPYESGDDALRKFFAQFG 34
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 34.3 bits (75), Expect = 0.041
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 12 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 113
++ + V TD TGR RGF F+ F + E ++K +
Sbjct: 29 DVVDVKVITDRETGRPRGFGFVTFGSKEEMEKAI 62
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 33.9 bits (74), Expect = 0.054
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
EV + D KN+ KGF F++F E + + TIGGK+V A K
Sbjct: 541 EVRVVKDPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARK 592
Score = 31.5 bits (68), Expect = 0.29
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 22/99 (22%)
Frame = +3
Query: 24 INVKTDPNTGRSRGFAFIVF-------KAPESIDKVMAAGEHTINN---KKVDPKKAK-- 167
+ V DP +S+GF F+ F KA +D V G+ N +K +P + K
Sbjct: 542 VRVVKDPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARKNNPTQTKPL 601
Query: 168 ----------ARHGKIFVGGLSSEISDDEIRNFFSEFGT 254
+ ++VG L ++ D E++ FS++G+
Sbjct: 602 VWDDVFHQSSQLNTTVYVGNLPPDVKDYELQQMFSQYGS 640
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 33.5 bits (73), Expect = 0.072
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK-----AKAR 173
G I + DP +G ++GFAF F + + ++NK++ P K
Sbjct: 176 GHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAV----KKLDNKEIRPGKRLGVCISVA 231
Query: 174 HGKIFVGGLSSEISDDEIRNFFSE 245
+ ++FVG + S EI FS+
Sbjct: 232 NSRLFVGSIPKTKSKQEILEEFSK 255
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 33.1 bits (72), Expect = 0.095
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPES 98
YGEI ++N+ D TG+ +GF F+ ++ S
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRS 32
Score = 27.1 bits (57), Expect = 6.2
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 257 LEVEMPFDKTKNQRKGFCFITFESEQ 334
+ V + DK ++KGFCF+ +E ++
Sbjct: 6 VNVNLVRDKKTGKQKGFCFLCYEDQR 31
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 33.1 bits (72), Expect = 0.095
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPES 98
YGEI ++N+ D TG+ +GF F+ ++ S
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRS 32
Score = 27.1 bits (57), Expect = 6.2
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 257 LEVEMPFDKTKNQRKGFCFITFESEQ 334
+ V + DK ++KGFCF+ +E ++
Sbjct: 6 VNVNLVRDKKTGKQKGFCFLCYEDQR 31
>SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 32.3 bits (70), Expect = 0.17
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +3
Query: 90 PESI-DKVMAAGEHTIN-NKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGT 254
PE++ D+++ + ++N + D + K+FVGGL +I +DEI F FG+
Sbjct: 313 PENLADQIVPSLASSLNCSPNSDSEHIPRFSRKVFVGGLPPDIDEDEIHASFCRFGS 369
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 31.9 bits (69), Expect = 0.22
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESID-KVMAAGEHTINNKKVDPKKAKARH--- 176
G + ++++ D T +G+ F+ F E D + + K + KA A +
Sbjct: 37 GPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIKVMNMIKVYGKPIRVNKASAHNKNL 96
Query: 177 ---GKIFVGGLSSEISDDEIRNFFSEFG 251
+F+G L +E+ + + + FS FG
Sbjct: 97 DVGANLFIGNLDTEVDEKLLYDTFSAFG 124
Score = 29.9 bits (64), Expect = 0.88
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +3
Query: 3 AYGEI-ESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTIN 137
A+G I ++ + D +TG S+GFAFI F + ++ D + A G++ N
Sbjct: 122 AFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIEAMNGQYLCN 169
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 31.9 bits (69), Expect = 0.22
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG 179
G + V +P G SRGFAF+ + E +K G+ N ++V+ + +G
Sbjct: 230 GNVTFAQVAINPANGGSRGFAFVDYATAEEAEK----GQRAHNGRQVEGSNIRVAYG 282
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 31.9 bits (69), Expect = 0.22
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 113
YG++ I + D NT SRGFAF+ F + M
Sbjct: 39 YGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDAM 74
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 31.9 bits (69), Expect = 0.22
Identities = 24/111 (21%), Positives = 53/111 (47%), Gaps = 17/111 (15%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPES-------IDKVMAAGEH-----TINNKKV 149
+G I I++ DP + +GFAF+ + PE+ ++ V+ G + N +
Sbjct: 125 FGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQMNGVLLGGRNIKVGRPSNVPQA 184
Query: 150 DP-----KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTS*KWRCPLTKQ 287
P ++ ++ +I++ + ++ +D+I++ F FG C L+K+
Sbjct: 185 APLIEQFEQEAKKYARIYIASVHPDLLEDDIKSVFEAFGK--VVHCSLSKE 233
Score = 29.9 bits (64), Expect = 0.88
Identities = 10/39 (25%), Positives = 25/39 (64%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 119
A+G++ ++ +P TG+ +G+ FI ++ +S + +A+
Sbjct: 221 AFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIAS 259
Score = 27.5 bits (58), Expect = 4.7
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 293 QRKGFCFITFESEQVVNDLLKTPKR-TIGGKEVDVKRATPKP 415
+ KG+ FI +E++Q ND + + +GG+ + V RA P
Sbjct: 238 KHKGYGFIEYENQQSANDAIASMNLFDLGGQFLRVGRAITPP 279
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 31.5 bits (68), Expect = 0.29
Identities = 13/71 (18%), Positives = 33/71 (46%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIF 188
G +ES+ + D TG +GF +++F++ +++ + +K+ +K + F
Sbjct: 80 GNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFALKMNNAEFKGRKIRVFPSKDKPQTEF 139
Query: 189 VGGLSSEISDD 221
+ + D+
Sbjct: 140 ISHIQVRFRDN 150
Score = 27.1 bits (57), Expect = 6.2
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +2
Query: 251 NFLEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 415
N V + D+ KGF ++ FES+ V LK G+++ V + KP
Sbjct: 81 NVESVRLIRDRKTGIGKGFGYVLFESKDAVVFALKMNNAEFKGRKIRVFPSKDKP 135
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 31.5 bits (68), Expect = 0.29
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +3
Query: 141 KKVDPK--KAKARHGKIFVGGLSSEISDDEIRNFFSEFGTS*KWRCPLTKQRTKER 302
KK+ PK + + G I++G + ++EI+ FF +FGT + R +K+ + +
Sbjct: 84 KKIKPKGDEDELSPGVIYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSK 139
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 128
+G + I + + RS+G+AF+ F A + + K+ A H
Sbjct: 121 FGTVNRIRLSRSKKSARSKGYAFVEF-ACDEVAKIAADTMH 160
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 31.5 bits (68), Expect = 0.29
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 119
YG++ + + D T SRG AFI+F +S +AA
Sbjct: 33 YGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVAA 70
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 31.1 bits (67), Expect = 0.38
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +3
Query: 15 IESINVKTDPNTGRSRGFAFIVFKAPESI 101
+E +++ D +GRSRGF F++ ++ + I
Sbjct: 34 VEKVDILRDKESGRSRGFGFVLLQSADQI 62
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 30.7 bits (66), Expect = 0.50
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
KIF+GGL + +++D+++ S FG
Sbjct: 674 KIFIGGLPNYLNEDQVKELLSSFG 697
Score = 27.9 bits (59), Expect = 3.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAF 74
++GE+ + N+ D TG S+G+AF
Sbjct: 695 SFGELRAFNLVKDSATGLSKGYAF 718
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 30.3 bits (65), Expect = 0.67
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFI---VFKAPESIDKVMAAGEHTINNKKVD 152
YGEI++++V D TG +G+A + FK +S + + E N VD
Sbjct: 316 YGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNGAEMLGQNISVD 367
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 29.9 bits (64), Expect = 0.88
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 119
+G+I V D T S+G AF+ +++ ES+ + +AA
Sbjct: 439 FGDIAYCKVVVDHLTQHSKGSAFVKYRSAESVTQCLAA 476
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 29.5 bits (63), Expect = 1.2
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 358
+V++ +D + Q KGFCF+T +++ + ++T
Sbjct: 303 KVDIMWDWQRQQCKGFCFVTMATQEEAQNAIQT 335
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
+IFV G + E ++ E+R FF E+G
Sbjct: 9 RIFVKGFNRETTESELRAFFEEYG 32
Score = 26.6 bits (56), Expect = 8.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 299 KGFCFITFESEQVVNDL 349
KG+ FITFES++V + L
Sbjct: 48 KGYAFITFESQEVADGL 64
>SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 621
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +3
Query: 15 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 152
I+ + K+ N G++ G AF+VFK+ K + I ++ ++
Sbjct: 361 IDLLKHKSGKNQGKNTGVAFVVFKSNNDASKALKMDRSYIGHRYIE 406
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFGT 254
K+FVG +S ++++R FS FGT
Sbjct: 215 KLFVGMISKHAKEEDLRVMFSPFGT 239
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 15 IESINVKTDPNTGRSRGFAFIVFKAPES 98
+ + V TD TGR RGF F+ +A ++
Sbjct: 107 VVDVRVITDRETGRPRGFGFVTLEAKKT 134
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 28.3 bits (60), Expect = 2.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPE 95
+G+I + + D T + RGF F+ F+ E
Sbjct: 28 FGDITDVQIPMDYTTSKHRGFGFVEFEFAE 57
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITFE-SEQVVNDLLKTPKRTIGGKEVDVKRATP 409
+V++P D T ++ +GF F+ FE +E + + + G+ + V A P
Sbjct: 33 DVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMNESELFGRTIRVNLAKP 83
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 28.3 bits (60), Expect = 2.7
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFGT 254
++F+G L S + D ++ FS++GT
Sbjct: 358 QVFIGNLPSGVKDADVNEVFSKYGT 382
>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 28.3 bits (60), Expect = 2.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 138 NKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 251
+K + K + K+FVG + ++ E+++FF FG
Sbjct: 66 SKDISKYKVVSNKCKVFVGNIGFKVRARELKDFFGYFG 103
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = +3
Query: 6 YGEIESINVK---TDPNTGRSRGFAFIVFKAPESIDKVM 113
+GEIE PN G RG+ F+ FK E K +
Sbjct: 410 FGEIEHFQFLFHGNGPNRGEPRGYCFVEFKKKEDARKAL 448
>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 3369
Score = 27.9 bits (59), Expect = 3.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 409 WCCTLHIDLLSTNCSFGSLKQIIYNL 332
WC D+L+T CS GS++ ++ L
Sbjct: 3068 WCLDCRGDILATGCSDGSVEVVVARL 3093
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 27.9 bits (59), Expect = 3.6
Identities = 8/23 (34%), Positives = 18/23 (78%)
Frame = +3
Query: 183 IFVGGLSSEISDDEIRNFFSEFG 251
++VGGL ++++ ++R+ F +FG
Sbjct: 306 LYVGGLEGKVTEQDLRDHFYQFG 328
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 27.5 bits (58), Expect = 4.7
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +3
Query: 183 IFVGGLSSEISDDEIRNFFSEFGTS*KWRCPLTKQRTKER 302
+FVG + E S+++++ FSE G +R ++ K +
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPK 66
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 27.5 bits (58), Expect = 4.7
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI---NNKKVDPKKAKARH 176
+G + +++K P G+ +AF+ F + K A + N+ K+ +++ +
Sbjct: 260 FGVVLDVDIKR-PARGQGNTYAFVKFADLDVAAKAKCAMQGQCIGRNHIKIGYGRSQ-QT 317
Query: 177 GKIFVGGLSSEISDDEIRNFFSEFG 251
+++VGGL IS E+ F FG
Sbjct: 318 TRLWVGGLGPWISIPELEREFDRFG 342
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 257 LEVEMPFDKTKNQRKGFCFITFESEQ 334
L V +P K + KGF FI FES+Q
Sbjct: 115 LYVSLPRFKHNGEIKGFAFIEFESKQ 140
Score = 27.1 bits (57), Expect = 6.2
Identities = 24/109 (22%), Positives = 49/109 (44%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKI 185
+G++ +++ + G +GFAFI F++ + + V+ KK + K+ + K
Sbjct: 111 FGKVLYVSLPRFKHNGEIKGFAFIEFESKQQAEHVVQMFNRESKTKK-EEKREPSIDDKT 169
Query: 186 FVGGLSSEISDDEIRNFFSEFGTS*KWRCPLTKQRTKERASVSSHLNLS 332
+ S+ ++ + S+ S R ++RT SV S+ N S
Sbjct: 170 KIKKRRRSHSESDLES--SKLSLSQSER---KRRRTTSETSVDSNENAS 213
>SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)
Length = 1276
Score = 27.5 bits (58), Expect = 4.7
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 393 TSTSFPPIVLLGVLSKSFTTCSDSNVMKQKPFLWFFVLSKG 271
T TS+P ++LLG L + S V ++K LW + L G
Sbjct: 177 TKTSYPLLLLLGKLLELIPPLSGEIVEREK--LWHYCLQNG 215
>SB_5101| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 27.1 bits (57), Expect = 6.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 409 WCCTLHIDLLSTNCSFGSLKQIIYNLLRF 323
WC T +L T+ +F +L +I LRF
Sbjct: 127 WCATAGCELSLTDHTFATLPSVIRGFLRF 155
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 26.6 bits (56), Expect = 8.2
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 84 KAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTS 257
K S + + E T KK P K + +F+G LS + ++ + FF E G S
Sbjct: 152 KEESSSESDSDSDEETPTPKKTVPAKEEM---SVFLGNLSFDADEETLAAFFEEKGLS 206
>SB_15594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 26.6 bits (56), Expect = 8.2
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = -3
Query: 414 GFGVARFTSTSFPPIVLL---GVLSKSFTTCSDSNVMKQKPFLWFFVLSK 274
G G+ R++S S P G +S S+T V ++ FL FFVL K
Sbjct: 388 GSGITRYSSLSVPFYCKFSSHGDVSLSYTIKKSVPVWHEEKFLSFFVLYK 437
>SB_16524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 825
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 409 WCCTLHIDLLSTNCSFGSLKQIIYNLLRF 323
WC T + TN +F +L +I LRF
Sbjct: 373 WCATAGCGVSLTNPAFATLPSVIRGFLRF 401
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,919,295
Number of Sequences: 59808
Number of extensions: 239183
Number of successful extensions: 735
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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