Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0145.Seq
(416 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 66 7e-12
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 66 7e-12
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 60 4e-10
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 56 7e-09
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 56 7e-09
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 56 7e-09
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 56 7e-09
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 55 2e-08
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 55 2e-08
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 53 7e-08
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 53 7e-08
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 52 1e-07
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 52 1e-07
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 52 1e-07
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 50 5e-07
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 40 2e-06
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 34 1e-05
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 44 3e-05
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 44 5e-05
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 42 1e-04
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 42 2e-04
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 42 2e-04
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 32 3e-04
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 41 4e-04
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 40 5e-04
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 40 9e-04
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 40 9e-04
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 40 9e-04
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 40 9e-04
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 39 0.001
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 39 0.001
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 39 0.002
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 39 0.002
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 39 0.002
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 39 0.002
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 38 0.002
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 38 0.002
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 38 0.003
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 38 0.004
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 38 0.004
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 35 0.004
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 37 0.005
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 37 0.005
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 37 0.005
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 37 0.005
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 37 0.005
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 36 0.008
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 36 0.008
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 36 0.011
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 36 0.011
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 36 0.011
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 36 0.011
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 36 0.014
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 36 0.014
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 36 0.014
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 35 0.019
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 35 0.019
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 35 0.019
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 35 0.019
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 35 0.019
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 35 0.019
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 35 0.025
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 35 0.025
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 35 0.025
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 34 0.033
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 34 0.044
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 34 0.044
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 34 0.044
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 34 0.044
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 34 0.044
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 33 0.058
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 33 0.058
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 33 0.058
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 33 0.058
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 33 0.058
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 33 0.077
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 33 0.077
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 33 0.077
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 33 0.077
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 33 0.077
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 33 0.077
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 33 0.077
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 33 0.077
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 32 0.14
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 32 0.14
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 32 0.14
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 32 0.14
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 32 0.14
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 32 0.14
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 32 0.18
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 32 0.18
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 32 0.18
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 32 0.18
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 32 0.18
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 31 0.24
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 31 0.24
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 31 0.24
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 31 0.31
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 31 0.31
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 31 0.31
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 31 0.31
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 31 0.31
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 31 0.41
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 31 0.41
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 31 0.41
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 31 0.41
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 30 0.54
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 30 0.54
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 30 0.54
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 30 0.72
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 30 0.72
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 30 0.72
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 30 0.72
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 30 0.72
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 30 0.72
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 29 0.95
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 29 0.95
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 29 0.95
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 29 0.95
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 29 0.95
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 29 0.95
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 29 0.95
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 29 0.95
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 29 1.3
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 29 1.3
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 29 1.7
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 29 1.7
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 29 1.7
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 29 1.7
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 28 2.2
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 28 2.2
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 28 2.2
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 28 2.2
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 28 2.2
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 28 2.9
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 28 2.9
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 28 2.9
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 28 2.9
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 28 2.9
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 28 2.9
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 28 2.9
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 28 2.9
At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ... 27 3.8
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 27 3.8
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 27 3.8
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 27 3.8
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 27 3.8
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 27 3.8
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 27 3.8
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 27 3.8
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 27 3.8
At5g49760.1 68418.m06163 leucine-rich repeat family protein / pr... 27 5.1
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 27 5.1
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 27 5.1
At5g18280.1 68418.m02149 apyrase (APY2) identical to apyrase GI:... 27 6.7
At5g09970.1 68418.m01152 cytochrome P450 family protein 27 6.7
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 27 6.7
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 27 6.7
At1g12290.1 68414.m01421 disease resistance protein (CC-NBS-LRR ... 27 6.7
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 26 8.9
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 26 8.9
At5g04770.1 68418.m00492 amino acid permease family protein simi... 26 8.9
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 26 8.9
At3g04080.1 68416.m00432 apyrase (APY1) identical to apyrase (At... 26 8.9
At2g33440.1 68415.m04099 splicing factor family protein similar ... 26 8.9
At1g62170.1 68414.m07013 serpin family protein / serine protease... 26 8.9
At1g15890.1 68414.m01906 disease resistance protein (CC-NBS-LRR ... 26 8.9
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 66.5 bits (155), Expect = 7e-12
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 11/93 (11%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--KARHG 179
YGEI + D +TG+ RGF FI F P +DKV+ H IN K+V+ K+ K G
Sbjct: 42 YGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVI-EDTHVINGKQVEIKRTIPKGAGG 100
Query: 180 ---------KIFVGGLSSEISDDEIRNFFSEFG 251
KIFVGG+ S +++DE+++FF+++G
Sbjct: 101 NQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYG 133
Score = 43.6 bits (98), Expect = 5e-05
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG------EHTINNKKVDPKKAK 167
YG + V D T RSRGF F++F + E +D++++ G + + KK +PKK+
Sbjct: 132 YGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKSL 191
Query: 168 ARHGKIFVGGLSSEISDDEIRNFFSEFG 251
R + S+D ++ +G
Sbjct: 192 NRSPPSYGSHPRGRSSNDSYASYGGPYG 219
Score = 39.5 bits (88), Expect = 9e-04
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +2
Query: 251 NFLEVEMPFDKTKNQRKGFCFITFESEQVVNDLL-KTPKRTIGGKEVDVKRATPK 412
N +E ++ D N+ +GF F+ F+SE+VV++LL K + +V++K+A PK
Sbjct: 134 NVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPK 188
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +2
Query: 278 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
D+ Q +GF FITF VV+ +++ I GK+V++KR PK
Sbjct: 53 DRHTGQPRGFGFITFADPSVVDKVIE-DTHVINGKQVEIKRTIPK 96
Score = 26.2 bits (55), Expect = 8.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 168 ARHGKIFVGGLSSEISDDEIRNFFSEFG 251
A GKIF+GGL + ++ F ++G
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYG 43
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 66.5 bits (155), Expect = 7e-12
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 11/93 (11%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--KARHG 179
YGEI + D +TG+ RGF FI F P +DKV+ H IN K+V+ K+ K G
Sbjct: 42 YGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVI-EDTHVINGKQVEIKRTIPKGAGG 100
Query: 180 ---------KIFVGGLSSEISDDEIRNFFSEFG 251
KIFVGG+ S +++DE+++FF+++G
Sbjct: 101 NQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYG 133
Score = 38.3 bits (85), Expect = 0.002
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 122
YG + V D T RSRGF F++F + E +D++++ G
Sbjct: 132 YGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +2
Query: 278 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
D+ Q +GF FITF VV+ +++ I GK+V++KR PK
Sbjct: 53 DRHTGQPRGFGFITFADPSVVDKVIE-DTHVINGKQVEIKRTIPK 96
Score = 32.7 bits (71), Expect = 0.10
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +2
Query: 251 NFLEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 352
N +E ++ D N+ +GF F+ F+SE+VV++LL
Sbjct: 134 NVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Score = 26.2 bits (55), Expect = 8.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 168 ARHGKIFVGGLSSEISDDEIRNFFSEFG 251
A GKIF+GGL + ++ F ++G
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYG 43
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 60.5 bits (140), Expect = 4e-10
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG-- 179
YGEI + D TG+ RGF F+ + +DKV+ H I K+V+ K+ R
Sbjct: 65 YGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ-DNHIIIGKQVEIKRTIPRGSMS 123
Query: 180 -------KIFVGGLSSEISDDEIRNFFSEFG 251
KIFVGG+ S + DDE + FF +FG
Sbjct: 124 SNDFKTKKIFVGGIPSSVDDDEFKEFFMQFG 154
Score = 44.8 bits (101), Expect = 2e-05
Identities = 18/57 (31%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH-TINNKKVDPKKAKAR 173
+GE++ + D +TGRSRGF F+ +++ + +D ++A G ++ +V+ KKA+ +
Sbjct: 153 FGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK 209
Score = 39.9 bits (89), Expect = 7e-04
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +2
Query: 278 DKTKNQRKGFCFITFESEQVVNDLLKTPKR-TIGGKEVDVKRATPK 412
D + + +GF F+T+ESE +V+ LL R + G +V++K+A PK
Sbjct: 164 DHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK 209
Score = 34.3 bits (75), Expect = 0.033
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 278 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
D+ Q +GF F+T+ VV+ +++ I GK+V++KR P+
Sbjct: 76 DRKTGQPRGFGFVTYADSSVVDKVIQ-DNHIIIGKQVEIKRTIPR 119
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 177 GKIFVGGLSSEISDDEIRNFFSEFG 251
GKIFVGGL+ E + E F ++G
Sbjct: 42 GKIFVGGLARETTSAEFLKHFGKYG 66
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 56.4 bits (130), Expect = 7e-09
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 25/108 (23%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR---- 173
YG++ + D TGR+RGF FIVF P ++V+ +H I+ + V+ KKA R
Sbjct: 29 YGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-MDKHIIDGRTVEAKKAVPRDDQQ 87
Query: 174 ---------------HG------KIFVGGLSSEISDDEIRNFFSEFGT 254
HG KIFVGGL S I+++E +N+F +FGT
Sbjct: 88 VLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGT 135
Score = 46.8 bits (106), Expect = 6e-06
Identities = 21/53 (39%), Positives = 32/53 (60%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 164
+G I + V D NT R RGF FI F + +++D+V+ H +N K V+ K+A
Sbjct: 133 FGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
+V + +D + +GF FITF+S+ V+ +L + GK V+VKRA PK
Sbjct: 138 DVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPK 188
Score = 33.1 bits (72), Expect = 0.077
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = +3
Query: 177 GKIFVGGLSSEISDDEIRNFFSEFG 251
GK+F+GG+S + ++ +R++FS +G
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYG 30
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 56.4 bits (130), Expect = 7e-09
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 25/108 (23%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR---- 173
YG++ + D TGR+RGF FIVF P ++V+ +H I+ + V+ KKA R
Sbjct: 29 YGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-MDKHIIDGRTVEAKKAVPRDDQQ 87
Query: 174 ---------------HG------KIFVGGLSSEISDDEIRNFFSEFGT 254
HG KIFVGGL S I+++E +N+F +FGT
Sbjct: 88 VLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGT 135
Score = 46.8 bits (106), Expect = 6e-06
Identities = 21/53 (39%), Positives = 32/53 (60%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 164
+G I + V D NT R RGF FI F + +++D+V+ H +N K V+ K+A
Sbjct: 133 FGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
+V + +D + +GF FITF+S+ V+ +L + GK V+VKRA PK
Sbjct: 138 DVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPK 188
Score = 33.1 bits (72), Expect = 0.077
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = +3
Query: 177 GKIFVGGLSSEISDDEIRNFFSEFG 251
GK+F+GG+S + ++ +R++FS +G
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYG 30
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 56.4 bits (130), Expect = 7e-09
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 25/108 (23%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR---- 173
YG++ + D TGR+RGF FIVF P ++V+ +H I+ + V+ KKA R
Sbjct: 29 YGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-MDKHIIDGRTVEAKKAVPRDDQQ 87
Query: 174 ---------------HG------KIFVGGLSSEISDDEIRNFFSEFGT 254
HG KIFVGGL S I+++E +N+F +FGT
Sbjct: 88 VLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGT 135
Score = 46.8 bits (106), Expect = 6e-06
Identities = 21/53 (39%), Positives = 32/53 (60%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 164
+G I + V D NT R RGF FI F + +++D+V+ H +N K V+ K+A
Sbjct: 133 FGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
+V + +D + +GF FITF+S+ V+ +L + GK V+VKRA PK
Sbjct: 138 DVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPK 188
Score = 33.1 bits (72), Expect = 0.077
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = +3
Query: 177 GKIFVGGLSSEISDDEIRNFFSEFG 251
GK+F+GG+S + ++ +R++FS +G
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYG 30
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 56.4 bits (130), Expect = 7e-09
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 12/94 (12%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPK--------- 158
+GE+ + TD TG RGF F+ F +KV+ +H I+++KVD K
Sbjct: 89 FGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE-DHVIDDRKVDLKRTLPRGDKD 147
Query: 159 ---KAKARHGKIFVGGLSSEISDDEIRNFFSEFG 251
KA ++ KIFVGGL + +DE++N+F +G
Sbjct: 148 TDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYG 181
Score = 50.4 bits (115), Expect = 5e-07
Identities = 21/57 (36%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAKAR 173
YG+I + D +TGRSRGF F+ F+ +S+D++ + G+ H + +K+V+ K+A+ +
Sbjct: 180 YGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
Score = 41.5 bits (93), Expect = 2e-04
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +2
Query: 251 NFLEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPK 412
+ +E ++ +D + +GF F+TF++E V+ L K +G K+V++KRA PK
Sbjct: 182 DIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
Score = 31.5 bits (68), Expect = 0.24
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 177 GKIFVGGLSSEISDDEIRNFFSEFG 251
GK+FVGG+S E + + N+F +FG
Sbjct: 66 GKLFVGGVSWETTAETFANYFGKFG 90
Score = 29.5 bits (63), Expect = 0.95
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 278 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
D+ +GF F+TF V +L+ I ++VD+KR P+
Sbjct: 100 DRITGNPRGFGFVTFADSAVAEKVLE-EDHVIDDRKVDLKRTLPR 143
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 55.2 bits (127), Expect = 2e-08
Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 25/107 (23%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH--- 176
YGE+ V D TGR RGF F++F P +D+V+ +H+I+ ++VD K+A +R
Sbjct: 29 YGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE-KHSIDTREVDVKRAMSREEQQ 87
Query: 177 ----------------------GKIFVGGLSSEISDDEIRNFFSEFG 251
KIFVGGL ++D+E R +F +G
Sbjct: 88 VSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYG 134
Score = 48.0 bits (109), Expect = 3e-06
Identities = 20/51 (39%), Positives = 34/51 (66%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
+V + +D+ N+ +GF F++F+SE V+ +L + GK+V+VKRA PK
Sbjct: 138 DVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPK 188
Score = 44.4 bits (100), Expect = 3e-05
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKI 185
YG + + + D T R RGF F+ F + +++D V+ H ++ K+V+ K+A +
Sbjct: 133 YGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANP 192
Query: 186 FVGGLS 203
GG S
Sbjct: 193 GGGGRS 198
Score = 33.5 bits (73), Expect = 0.058
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 177 GKIFVGGLSSEISDDEIRNFFSEFG 251
GK+FVGG+S E +D++R F+ +G
Sbjct: 6 GKLFVGGISWETDEDKLREHFTNYG 30
Score = 33.5 bits (73), Expect = 0.058
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +2
Query: 230 KLLQ*IWNFLEVEMPF---DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKR 400
KL + N+ EV DK + +GF F+ F V++ +L+ K +I +EVDVKR
Sbjct: 21 KLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE-KHSIDTREVDVKR 79
Query: 401 A 403
A
Sbjct: 80 A 80
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 54.8 bits (126), Expect = 2e-08
Identities = 39/111 (35%), Positives = 55/111 (49%), Gaps = 28/111 (25%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR---- 173
YG++ + D TGR+RGF FIVF P ++V+ +H I+ + V+ KKA R
Sbjct: 38 YGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-MDKHIIDGRTVEAKKAVPRDDQQ 96
Query: 174 ---------------HG---------KIFVGGLSSEISDDEIRNFFSEFGT 254
HG KIFVGGL S I++ E +N+F +FGT
Sbjct: 97 VLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITEAEFKNYFDQFGT 147
Score = 48.4 bits (110), Expect = 2e-06
Identities = 23/53 (43%), Positives = 31/53 (58%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 164
+G I + V D NT R RGF FI F + ES+D V+ H +N K V+ K+A
Sbjct: 145 FGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRA 197
Score = 44.0 bits (99), Expect = 4e-05
Identities = 21/51 (41%), Positives = 32/51 (62%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
+V + +D + +GF FITF+SE+ V+ +L + GK V+VKRA PK
Sbjct: 150 DVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVPK 200
Score = 32.3 bits (70), Expect = 0.14
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 251 NFLEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
+ +E + D+T + +GF FI F V ++ K I G+ V+ K+A P+
Sbjct: 40 DLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-MDKHIIDGRTVEAKKAVPR 92
Score = 29.9 bits (64), Expect = 0.72
Identities = 8/25 (32%), Positives = 19/25 (76%)
Frame = +3
Query: 177 GKIFVGGLSSEISDDEIRNFFSEFG 251
GK+F+GG+S + ++ ++ +F ++G
Sbjct: 15 GKLFIGGISWDTDEERLQEYFGKYG 39
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 53.2 bits (122), Expect = 7e-08
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 21/104 (20%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG- 179
++GE+ + D TGR+RGF F+VF P ++V+ +H I+ K V+ KKA R
Sbjct: 28 SFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL-KHIIDGKIVEAKKAVPRDDH 86
Query: 180 --------------------KIFVGGLSSEISDDEIRNFFSEFG 251
KIFVGGL+S +++ E + +F++FG
Sbjct: 87 VVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFG 130
Score = 43.6 bits (98), Expect = 5e-05
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 164
+G I + V D T R RGF FI + + E++DKV+ H +N K V+ K A
Sbjct: 129 FGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181
Score = 40.3 bits (90), Expect = 5e-04
Identities = 18/51 (35%), Positives = 32/51 (62%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
+V + +D + +GF FI+++SE+ V+ +L+ + GK V+VK A PK
Sbjct: 134 DVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 184
Score = 34.3 bits (75), Expect = 0.033
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
K+F+GG+S E S+D +R++F FG
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFG 30
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 53.2 bits (122), Expect = 7e-08
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 21/104 (20%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG- 179
++GE+ + D TGR+RGF F+VF P ++V+ +H I+ K V+ KKA R
Sbjct: 28 SFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL-KHIIDGKIVEAKKAVPRDDH 86
Query: 180 --------------------KIFVGGLSSEISDDEIRNFFSEFG 251
KIFVGGL+S +++ E + +F++FG
Sbjct: 87 VVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFG 130
Score = 43.6 bits (98), Expect = 5e-05
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 164
+G I + V D T R RGF FI + + E++DKV+ H +N K V+ K A
Sbjct: 129 FGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181
Score = 40.3 bits (90), Expect = 5e-04
Identities = 18/51 (35%), Positives = 32/51 (62%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
+V + +D + +GF FI+++SE+ V+ +L+ + GK V+VK A PK
Sbjct: 134 DVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 184
Score = 34.3 bits (75), Expect = 0.033
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
K+F+GG+S E S+D +R++F FG
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFG 30
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 52.4 bits (120), Expect = 1e-07
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 23/108 (21%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA------ 164
++GE+ + D TGR+RGF F+VF P ++ +++ +H I+ + V+ KKA
Sbjct: 28 SFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLVEAKKAVPRDDQ 86
Query: 165 -----------------KARHGKIFVGGLSSEISDDEIRNFFSEFGTS 257
R KIFVGGL S +++ + + +F +FGT+
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTT 134
Score = 43.6 bits (98), Expect = 5e-05
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
+V + +D + +GF FIT++SE+ V +L + GK V+VKRA PK
Sbjct: 136 DVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPK 186
Score = 33.9 bits (74), Expect = 0.044
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +3
Query: 174 HGKIFVGGLSSEISDDEIRNFFSEFGTS*KWRCPLTKQRTKERA 305
+GK+F+GG+S + +++ ++ +FS FG + K RT RA
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGE--VIEAVILKDRTTGRA 46
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 52.4 bits (120), Expect = 1e-07
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 23/108 (21%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA------ 164
++GE+ + D TGR+RGF F+VF P ++ +++ +H I+ + V+ KKA
Sbjct: 28 SFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLVEAKKAVPRDDQ 86
Query: 165 -----------------KARHGKIFVGGLSSEISDDEIRNFFSEFGTS 257
R KIFVGGL S +++ + + +F +FGT+
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTT 134
Score = 43.6 bits (98), Expect = 5e-05
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
+V + +D + +GF FIT++SE+ V +L + GK V+VKRA PK
Sbjct: 136 DVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPK 186
Score = 33.9 bits (74), Expect = 0.044
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +3
Query: 174 HGKIFVGGLSSEISDDEIRNFFSEFGTS*KWRCPLTKQRTKERA 305
+GK+F+GG+S + +++ ++ +FS FG + K RT RA
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGE--VIEAVILKDRTTGRA 46
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 52.4 bits (120), Expect = 1e-07
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 25/107 (23%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH--- 176
+GE+ + V + TGR RGF F+ F P ID+V+ +H I+N+ VD K+A +R
Sbjct: 29 FGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVL-QDKHHIDNRDVDVKRAMSREEQS 87
Query: 177 ----------------------GKIFVGGLSSEISDDEIRNFFSEFG 251
KIFVGGL ++ DE R +F +G
Sbjct: 88 PAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEFRAYFETYG 134
Score = 44.4 bits (100), Expect = 3e-05
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 164
YG + + D T R RGF F+ F + +S+D V+ H +N K+V+ K+A
Sbjct: 133 YGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRA 185
Score = 42.3 bits (95), Expect = 1e-04
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = +2
Query: 278 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
D+T + +GF F++F+SE V+ +L + GK+V+VKRA PK
Sbjct: 144 DQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALPK 188
Score = 33.1 bits (72), Expect = 0.077
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +2
Query: 257 LEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 403
L+V + +K + +GF F+ F V++ +L+ K I ++VDVKRA
Sbjct: 33 LQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD-KHHIDNRDVDVKRA 80
Score = 32.3 bits (70), Expect = 0.14
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 177 GKIFVGGLSSEISDDEIRNFFSEFG 251
GK+F+GG+S + ++ +R +FS FG
Sbjct: 6 GKLFIGGISWDTDENLLREYFSNFG 30
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 50.4 bits (115), Expect = 5e-07
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH--- 176
+G++E V D +TGRSRGF ++ F + E + GEH + N+ ++ K A +
Sbjct: 26 FGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL-KGEHFLGNRILEVKVATPKEEMR 84
Query: 177 ------GKIFVGGLSSEISDDEIRNFFSEFG 251
+IFV + S +S+ + R+ F +G
Sbjct: 85 QPAKKVTRIFVARIPSSVSESDFRSHFERYG 115
Score = 41.1 bits (92), Expect = 3e-04
Identities = 22/51 (43%), Positives = 28/51 (54%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
++ MP D Q +G FITF S V DL++ +GG V V RATPK
Sbjct: 119 DLYMPKDYNSKQHRGIGFITFSSADSVEDLME-DTHDLGGTTVAVDRATPK 168
Score = 31.9 bits (69), Expect = 0.18
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +2
Query: 278 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
D++ + +GF ++TF S + + LK + +G + ++VK ATPK
Sbjct: 37 DRSTGRSRGFGYVTFASAEDAKNALK-GEHFLGNRILEVKVATPK 80
Score = 31.5 bits (68), Expect = 0.24
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
KIFVG L E S D++R++F FG
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFG 264
Score = 31.1 bits (67), Expect = 0.31
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 269 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATP 409
+P D ++ +GF F+TF +E V D + I G+EV + ATP
Sbjct: 271 IPKDPKRSGHRGFGFVTF-AENGVADRVARRSHEICGQEVAIDSATP 316
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 149
+G I+ + DP RGF F+ F D+V A H I ++V
Sbjct: 263 FGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRV-ARRSHEICGQEV 309
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 39.5 bits (88), Expect = 9e-04
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
+V + D N+ +GF F+T++SE V ++++ + K V+VKRA PK
Sbjct: 148 DVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPK 198
Score = 35.5 bits (78), Expect(2) = 2e-06
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +3
Query: 168 ARHGKIFVGGLSSEISDDEIRNFFSEFG 251
+R KIFVGGLSS +++E +++F FG
Sbjct: 117 SRTKKIFVGGLSSNTTEEEFKSYFERFG 144
Score = 32.3 bits (70), Expect(2) = 2e-06
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 176
YG + V + TG+ RGF F+ F + K + H I K VD +KA +H
Sbjct: 29 YGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKAL-RDTHFILGKPVDVRKAIRKH 84
Score = 31.9 bits (69), Expect = 0.18
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
K+FVGG++ E S++ ++ +FS +G
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYG 30
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 33.9 bits (74), Expect(2) = 1e-05
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +3
Query: 96 SIDKVMAAGEHTINNKKV--DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTS*KWR 269
S V+ AG H N ++ + IFVGG+ ++ D+++R FS+FG +
Sbjct: 292 SSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVK 351
Query: 270 CPLTK 284
P+ K
Sbjct: 352 IPVGK 356
Score = 31.1 bits (67), Expect(2) = 1e-05
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVF 83
Y ++S V D NTGRS+G+ F+ F
Sbjct: 226 YPSVKSAKVVIDSNTGRSKGYGFVRF 251
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 44.4 bits (100), Expect = 3e-05
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV---------- 149
A+G I S V DP+ G+S+G+ F+ + E+ + +N+K+V
Sbjct: 155 AFGPILSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQ 213
Query: 150 -DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTS 257
DP K + ++V LS +SD+E+ F EFG +
Sbjct: 214 RDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVT 250
Score = 36.7 bits (81), Expect = 0.006
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV-------DPKKA 164
G++ S+ V D T RS G+ ++ + P+ + + +N + + DP
Sbjct: 69 GQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVRDPSLR 128
Query: 165 KARHGKIFVGGLSSEISDDEIRNFFSEFG 251
K+ G IF+ L I + FS FG
Sbjct: 129 KSGVGNIFIKNLDKSIDHKALHETFSAFG 157
Score = 29.5 bits (63), Expect = 0.95
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 113
+G I S V DP+ G SRG F+ F PE + +
Sbjct: 350 FGTITSCKVMRDPS-GVSRGSGFVAFSTPEEATRAI 384
Score = 29.1 bits (62), Expect = 1.3
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 165 KARHGKIFVGGLSSEISDDEIRNFFSEFGT 254
K++ ++V L ++DD++R F+ FGT
Sbjct: 323 KSQGSNLYVKNLDESVTDDKLREHFAPFGT 352
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 43.6 bits (98), Expect = 5e-05
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 164
+G I + V D T R RGF FI + + E++DKV+ H +N K V+ K A
Sbjct: 56 FGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 108
Score = 40.3 bits (90), Expect = 5e-04
Identities = 18/51 (35%), Positives = 32/51 (62%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
+V + +D + +GF FI+++SE+ V+ +L+ + GK V+VK A PK
Sbjct: 61 DVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 111
Score = 35.9 bits (79), Expect = 0.011
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +3
Query: 105 KVMAAGEHTINNKK---VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 251
K + +H + NK + + KIFVGGL+S +++ E + +F++FG
Sbjct: 6 KAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFG 57
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 42.3 bits (95), Expect = 1e-04
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 182
+YGEIE +V D +TGR +G+ F++FK + + + E + N+ V A + GK
Sbjct: 430 SYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRMYNRIVVCNLASEKPGK 489
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 41.9 bits (94), Expect = 2e-04
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--------GEHTINNKKVDPKK 161
+ ++ +N+ D T SRG F++ + E DK++ A G +++ K +
Sbjct: 41 FAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYADGE 100
Query: 162 AKARHGKIFVGGLSSEISDDEIRNFFSEFGT 254
+ K+FVG L +S+ E+++ FS++GT
Sbjct: 101 LERLEHKLFVGMLPKNVSEAEVQSLFSKYGT 131
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 41.9 bits (94), Expect = 2e-04
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--------GEHTINNKKVDPKK 161
+ ++ +N+ D T SRG F++ + E DK++ A G +++ K +
Sbjct: 41 FAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYADGE 100
Query: 162 AKARHGKIFVGGLSSEISDDEIRNFFSEFGT 254
+ K+FVG L +S+ E+++ FS++GT
Sbjct: 101 LERLEHKLFVGMLPKNVSEAEVQSLFSKYGT 131
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 32.3 bits (70), Expect(2) = 3e-04
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 161
YG I S V D + G+SR F F+ F+ PE + + A +N KK D K+
Sbjct: 248 YGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEA----LNGKKFDDKE 294
Score = 27.9 bits (59), Expect(2) = 3e-04
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 183 IFVGGLSSEISDDEIRNFFSEFGT 254
++V L ++D+++R F+EFGT
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGT 353
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 40.7 bits (91), Expect = 4e-04
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 173
YGE+ + D TGRSRGFAF+ F + E M ++ +++ A R
Sbjct: 57 YGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVNYATER 112
Score = 29.9 bits (64), Expect = 0.72
Identities = 11/52 (21%), Positives = 29/52 (55%)
Frame = +2
Query: 257 LEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 412
++ ++ D+ + +GF F+TF S + ++ ++ + + G+ + V AT +
Sbjct: 61 VDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVNYATER 112
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
KIFVGG+S + +R FS++G
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYG 58
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 40.3 bits (90), Expect = 5e-04
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 152
YGEI V D NTGRS+G+ F+ F+ PE+ + A I+ ++ +
Sbjct: 47 YGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRAN 95
Score = 28.3 bits (60), Expect = 2.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
K+FVGGL+ E + +R F ++G
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYG 48
Score = 27.1 bits (57), Expect = 5.1
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = +2
Query: 257 LEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT---PKP 415
LE + DK + KG+ F+TF + P I G+ + A+ P+P
Sbjct: 51 LEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRP 106
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 39.5 bits (88), Expect = 9e-04
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 152
+GEI + TD NTG+S+G+ F+ F+ +S + +A I+ +K +
Sbjct: 40 FGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKAN 88
Score = 33.9 bits (74), Expect = 0.044
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
K+FVGGL+ E DE+R +F +FG
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFG 41
Score = 27.5 bits (58), Expect = 3.8
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = +2
Query: 257 LEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT---PKP 415
LE + DK + KG+ F+TF + P I G++ + A+ P+P
Sbjct: 44 LEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRP 99
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 39.5 bits (88), Expect = 9e-04
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 152
+GEI + TD NTG+S+G+ F+ F+ +S + +A I+ +K +
Sbjct: 40 FGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKAN 88
Score = 33.9 bits (74), Expect = 0.044
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
K+FVGGL+ E DE+R +F +FG
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFG 41
Score = 27.5 bits (58), Expect = 3.8
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = +2
Query: 257 LEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT---PKP 415
LE + DK + KG+ F+TF + P I G++ + A+ P+P
Sbjct: 44 LEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRP 99
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 39.5 bits (88), Expect = 9e-04
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPES 98
YG+I V TD NTGRS+G+ F+ F+ PE+
Sbjct: 47 YGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77
Score = 28.3 bits (60), Expect = 2.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
K+FVGGL+ E + +R F ++G
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYG 48
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/52 (25%), Positives = 22/52 (42%)
Frame = +2
Query: 251 NFLEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT 406
+ LE + DK + KG+ F+TF + P I G+ + A+
Sbjct: 49 DILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLAS 100
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 39.5 bits (88), Expect = 9e-04
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Frame = +3
Query: 15 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV-----DPKKAKARHG 179
+ +N+ + T RG F+ E DKV+ ++ +NKK P + K G
Sbjct: 38 VNEVNIIKEKTTRAPRGCCFLTCPTREDADKVI----NSFHNKKTLPGASSPLQVKYADG 93
Query: 180 -------KIFVGGLSSEISDDEIRNFFSEFGT 254
K+FVG L +S+ E+++ FSE+GT
Sbjct: 94 ELERLEHKLFVGMLPKNVSETEVQSLFSEYGT 125
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 39.1 bits (87), Expect = 0.001
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 164
+GEI V D T RS+GF F+ F+ ES + HTI+ + V+ K A
Sbjct: 32 FGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCKLA 84
Score = 30.3 bits (65), Expect = 0.54
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 278 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 403
D + KGF F+TF + + P TI G+ V+ K A
Sbjct: 43 DGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCKLA 84
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 39.1 bits (87), Expect = 0.001
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 19/101 (18%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV------------ 149
YGEIE D +G+S+G+ FI+FK+ + + I +
Sbjct: 151 YGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLASIGPVQG 210
Query: 150 DPKKAKARH-------GKIFVGGLSSEISDDEIRNFFSEFG 251
+P A A+H KI+V +S++I ++ FFS FG
Sbjct: 211 NPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFSRFG 251
Score = 33.9 bits (74), Expect = 0.044
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 164
+GEIE + D TGR +GFA V+++ ES K + T + KA
Sbjct: 250 FGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKA 302
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/81 (23%), Positives = 35/81 (43%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIF 188
GEI + + D ++G S+G+AF+ FK + K + K ++F
Sbjct: 140 GEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLF 199
Query: 189 VGGLSSEISDDEIRNFFSEFG 251
+G + ++DE R + G
Sbjct: 200 IGNIPKNWTEDEFRKVIEDVG 220
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/24 (50%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +3
Query: 15 IESINVKTDP-NTGRSRGFAFIVF 83
+E+I + DP NT R+RGFAF+++
Sbjct: 223 VENIELIKDPTNTTRNRGFAFVLY 246
Score = 27.5 bits (58), Expect = 3.8
Identities = 9/27 (33%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +3
Query: 174 HG-KIFVGGLSSEISDDEIRNFFSEFG 251
HG ++F+GGL ++ ++++R+ E G
Sbjct: 114 HGSEVFIGGLPRDVGEEDLRDLCEEIG 140
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 164
AYG++E + D TG+SRGFA V+K E +A I+ K ++ K A
Sbjct: 189 AYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
Score = 33.5 bits (73), Expect = 0.058
Identities = 21/79 (26%), Positives = 39/79 (49%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 182
+YG++E V D TG+S+G+ F+ F +D + A + +KK+D + +
Sbjct: 97 SYGDLEEAIVILDKVTGKSKGYGFVTFM---HVDGALLALKEP--SKKIDGRVTVTQLAA 151
Query: 183 IFVGGLSSEISDDEIRNFF 239
G S+I+D +R +
Sbjct: 152 SGNQGTGSQIADISMRKIY 170
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 403
E + FDK + +GF +++ + L P + I GK ++ K A
Sbjct: 195 EGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 164
AYG++E + D TG+SRGFA V+K E +A I+ K ++ K A
Sbjct: 189 AYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
Score = 33.5 bits (73), Expect = 0.058
Identities = 21/79 (26%), Positives = 39/79 (49%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 182
+YG++E V D TG+S+G+ F+ F +D + A + +KK+D + +
Sbjct: 97 SYGDLEEAIVILDKVTGKSKGYGFVTFM---HVDGALLALKEP--SKKIDGRVTVTQLAA 151
Query: 183 IFVGGLSSEISDDEIRNFF 239
G S+I+D +R +
Sbjct: 152 SGNQGTGSQIADISMRKIY 170
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 403
E + FDK + +GF +++ + L P + I GK ++ K A
Sbjct: 195 EGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 38.7 bits (86), Expect = 0.002
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 14/97 (14%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVFKAPES----IDKV--MAAGE------HTINNKK 146
++G I S V D TGRS+G+ F+ F+ ES IDK+ M + H I ++
Sbjct: 158 SFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQE 216
Query: 147 V--DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 251
D R ++V L EI +DE+R F +FG
Sbjct: 217 RARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFG 253
Score = 35.5 bits (78), Expect = 0.014
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Frame = +3
Query: 15 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT--------INNKKVDPKKAKA 170
+ S+ V D N RS G+A+I F P + M A +T I DP +
Sbjct: 75 VVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLS 133
Query: 171 RHGKIFVGGLSSEISDDEIRNFFSEFGT 254
G IF+ L + I + + FS FGT
Sbjct: 134 GKGNIFIKNLDASIDNKALFETFSSFGT 161
Score = 29.9 bits (64), Expect = 0.72
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPE 95
YG + S V +P G SRGF F+ + PE
Sbjct: 355 YGNVTSSKVMLNPQ-GMSRGFGFVAYSNPE 383
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 38.3 bits (85), Expect = 0.002
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFK-------APESIDKVMAAGEHTINNK---KVDP 155
+G I S V T + G+SRG+ F+ F+ A ++++ + A + K K D
Sbjct: 135 FGNIVSCKVATLED-GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDR 193
Query: 156 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 251
K + ++ +++ L +++S+D +R F+EFG
Sbjct: 194 VKPEEKYTNLYMKNLDADVSEDLLREKFAEFG 225
Score = 27.9 bits (59), Expect = 2.9
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKV 110
G I S + D G+S+GF F+ F P E+ID V
Sbjct: 328 GTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAV 361
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +3
Query: 141 KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGT 254
+K + +K A+ I+V ++ ++++E+R FS+ GT
Sbjct: 292 EKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGT 329
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 149
YGEI +V D +TGR++GF F++FK + + E + N+ V
Sbjct: 186 YGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTV 233
Score = 29.5 bits (63), Expect = 0.95
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATP 409
E + DK + KGF F+ F++ + LK P++ + + V A P
Sbjct: 191 ECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTVSCLPARP 240
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPES 98
+GEI V TD NTGRS+G+ F+ FK E+
Sbjct: 45 FGEIVEAVVITDKNTGRSKGYGFVTFKEAEA 75
Score = 31.9 bits (69), Expect = 0.18
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
KIFVGGL+ E D +R +F +FG
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFG 46
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 37.5 bits (83), Expect = 0.004
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK 143
YGEIE V D TG+++GF F++FK + + + + I N+
Sbjct: 127 YGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172
Score = 31.5 bits (68), Expect = 0.24
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 415
E + DK + KGF F+ F++ + + LK PK+ I + + A+ P
Sbjct: 132 ECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTATCQLASMGP 183
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 37.5 bits (83), Expect = 0.004
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK 143
YGEIE V D TG+++GF F++FK + + + + I N+
Sbjct: 127 YGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172
Score = 31.5 bits (68), Expect = 0.24
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 415
E + DK + KGF F+ F++ + + LK PK+ I + + A+ P
Sbjct: 132 ECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTATCQLASMGP 183
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 35.1 bits (77), Expect = 0.019
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +2
Query: 257 LEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT-PKRTIGGKEVDVKRATPKP 415
+E + +D+ + KGF F+T++S Q V + +K+ + G+++ V A +P
Sbjct: 231 VEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARP 284
Score = 33.5 bits (73), Expect(2) = 0.004
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG 179
G +E + V D TGRSRGF F+ S+ +V AA + N ++D + + G
Sbjct: 115 GNVEMVEVIYDKITGRSRGFGFVTM---SSVSEVEAAAQQ-FNGYELDGRPLRVNAG 167
Score = 29.5 bits (63), Expect = 0.95
Identities = 12/56 (21%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT-INNKKVDPKKAKAR 173
G++ V D ++GRS+GF F+ + + + + + + + ++ +++ +A+AR
Sbjct: 228 GKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
Score = 23.0 bits (47), Expect(2) = 0.004
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
+++VG LS + D + + FSE G
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQG 228
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 37.1 bits (82), Expect = 0.005
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 119
YGE+ V D TGRSRGF F+ F + E+ + A
Sbjct: 63 YGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Score = 29.1 bits (62), Expect = 1.3
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFGTS*KWRCPLTKQRTKER 302
K+F+GG++ + +D +R F+++G R L ++ + R
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSR 81
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 37.1 bits (82), Expect = 0.005
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 164
+GEI +NV D T RS+G+ F+ FK ES + TI + + K A
Sbjct: 36 FGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDPNPTIEGRITNCKLA 88
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 37.1 bits (82), Expect = 0.005
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVDPKKAKARHG 179
YG + V D +GRSRGF FI F +++D+ +AA ++ + + KA+ G
Sbjct: 30 YGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQPHQG 88
Score = 30.7 bits (66), Expect = 0.41
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 251 NFLEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATP 409
+ +E ++ DK + +GF FITF+ ++ +++ + + G+ + V +A P
Sbjct: 32 HLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQP 85
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 37.1 bits (82), Expect = 0.005
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKAR 173
YG++ + D TGRSRGF F+ FK +++ D + ++ + + +A++R
Sbjct: 31 YGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 278 DKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRA 403
D+ + +GF F+TF+ E+ + D ++ + + G+ + V A
Sbjct: 42 DRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEA 84
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 37.1 bits (82), Expect = 0.005
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKAR 173
YG++ + D TGRSRGF F+ FK +++ D + ++ + + +A++R
Sbjct: 31 YGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 278 DKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRA 403
D+ + +GF F+TF+ E+ + D ++ + + G+ + V A
Sbjct: 42 DRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEA 84
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 36.3 bits (80), Expect = 0.008
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 116
Y + V TDP+TGRS+G+ F+ F ++ MA
Sbjct: 140 YSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 36.3 bits (80), Expect = 0.008
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 174 HGKIFVGGLSSEISDDEIRNFFSEFG 251
H K+FVGGL+ E DE+R +F +FG
Sbjct: 16 HTKVFVGGLAWETPTDEMRRYFDQFG 41
Score = 35.9 bits (79), Expect = 0.011
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 152
+GEI + TD TG+S+G+ F+ F+ +S + +A I+ +K +
Sbjct: 40 FGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGRKAN 88
Score = 27.5 bits (58), Expect = 3.8
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = +2
Query: 257 LEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT---PKP 415
LE + DK + KG+ F+TF + P I G++ + A+ P+P
Sbjct: 44 LEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRP 99
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 35.9 bits (79), Expect = 0.011
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPES 98
YGEI +N+ D TG+S+GFAF+ ++ S
Sbjct: 59 YGEIVDVNLIRDKGTGKSKGFAFLAYEDQRS 89
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 35.9 bits (79), Expect = 0.011
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Frame = +3
Query: 12 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP-----------K 158
EI S+ V + N G S G+ F+ F++ + DKV+ T P +
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGE 187
Query: 159 KAKARHG---KIFVGGLSSEISDDEIRNFFSE 245
K +G IFVG LS ++SD+ + FSE
Sbjct: 188 KRLENNGPDLSIFVGDLSPDVSDNLLHETFSE 219
Score = 30.3 bits (65), Expect = 0.54
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 113
Y +++ V D NTGRS+G+ F+ F K M
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 35.9 bits (79), Expect = 0.011
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Frame = +3
Query: 12 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP-----------K 158
EI S+ V + N G S G+ F+ F++ + DKV+ T P +
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGE 187
Query: 159 KAKARHG---KIFVGGLSSEISDDEIRNFFSE 245
K +G IFVG LS ++SD+ + FSE
Sbjct: 188 KRLENNGPDLSIFVGDLSPDVSDNLLHETFSE 219
Score = 33.9 bits (74), Expect = 0.044
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 183 IFVGGLSSEISDDEIRNFFSEFGTS*KWRCPLTK 284
IFVGGL S ++D++++ F+EFG + P+ K
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGK 339
Score = 30.3 bits (65), Expect = 0.54
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 113
Y +++ V D NTGRS+G+ F+ F K M
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 35.9 bits (79), Expect = 0.011
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI-NNKKVDPKKAKARHGK 182
G++ +++ DP T SRGF FI K+ ++ + + +H++ + + +KA+ R G+
Sbjct: 99 GKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKARRRRGR 157
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 35.5 bits (78), Expect = 0.014
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVF-------KAPESID-KVMAAGEHTINNKKVDPKK 161
YG++ + + D TG SRGFAF+ + KA E +D +V+ E T+ K P
Sbjct: 39 YGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNA 98
Query: 162 AKARHGKI 185
K G++
Sbjct: 99 EKISKGRV 106
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 35.5 bits (78), Expect = 0.014
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVF-------KAPESID-KVMAAGEHTINNKKVDPKK 161
YG++ + + D TG SRGFAF+ + KA E +D +V+ E T+ K P
Sbjct: 39 YGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNA 98
Query: 162 AKARHGKI 185
K G++
Sbjct: 99 EKISKGRV 106
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 35.5 bits (78), Expect = 0.014
Identities = 14/82 (17%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPE-SIDKVMAAGEHTINNKKVDPKKAKARHGKI 185
GE+ + + + ++G +G+AF+ F++ + + + + K++ +A+H ++
Sbjct: 116 GEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKH-RL 174
Query: 186 FVGGLSSEISDDEIRNFFSEFG 251
F+G + + +I+ + G
Sbjct: 175 FLGNVPRNWMESDIKKAANRIG 196
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT-IGGKEV 388
EV + +K KG+ F+TF S+ + + + T T GK +
Sbjct: 120 EVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRI 163
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 35.1 bits (77), Expect = 0.019
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +3
Query: 183 IFVGGLSSEISDDEIRNFFSEFG 251
IFVGGL + ++DDE+++ F +FG
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFG 284
Score = 29.9 bits (64), Expect = 0.72
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVF 83
YG ++ V D TGRS+G+ F+ F
Sbjct: 178 YGSVKGAKVVLDRTTGRSKGYGFVRF 203
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 35.1 bits (77), Expect = 0.019
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 113
++GE+ V D TGRSRGF F+ F +S + +
Sbjct: 57 SFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
K+FVGGLS D ++ F+ FG
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFG 59
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 35.1 bits (77), Expect = 0.019
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 113
++GE+ V D TGRSRGF F+ F +S + +
Sbjct: 57 SFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
K+FVGGLS D ++ F+ FG
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFG 59
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 35.1 bits (77), Expect = 0.019
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 183 IFVGGLSSEISDDEIRNFFSEFGTS*KWRCPLTK 284
IFVGGL S ++D++++ FSEFG + P+ K
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK 341
Score = 30.3 bits (65), Expect = 0.54
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 113
Y +++ V D NTGRS+G+ F+ F K M
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 258
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 35.1 bits (77), Expect = 0.019
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 152
+G+I V TD ++GRS+G+ F+ F PE+ K I+ ++ +
Sbjct: 30 FGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGRRAN 78
Score = 31.1 bits (67), Expect = 0.31
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
K+FVGGL+ E +RN+F +FG
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFG 31
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 35.1 bits (77), Expect = 0.019
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 152
+G+I V TD ++GRS+G+ F+ F PE+ K I+ ++ +
Sbjct: 30 FGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGRRAN 78
Score = 31.1 bits (67), Expect = 0.31
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
K+FVGGL+ E +RN+F +FG
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFG 31
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 34.7 bits (76), Expect = 0.025
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Frame = +3
Query: 48 TGRSRGFAFIVFKAPESIDKVMAAGEHT-INNKKV-------DPKKAKARHGKIFVGGLS 203
T RS G+A++ F PE + M + + I ++ + DP + G +F+ L
Sbjct: 81 THRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLD 140
Query: 204 SEISDDEIRNFFSEFGT 254
+ I + + FS FGT
Sbjct: 141 ASIDNKALYETFSSFGT 157
Score = 30.3 bits (65), Expect = 0.54
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 24/106 (22%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPE----SIDKV--MAAGEHTI----NNKKVDP 155
YG+I S V D +G SR F F+ F +PE +++K+ ++ GE + KK D
Sbjct: 248 YGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDR 306
Query: 156 KK--------------AKARHGKIFVGGLSSEISDDEIRNFFSEFG 251
++ K + +++ L ++D++++ FSE+G
Sbjct: 307 EEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYG 352
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPE 95
YG + S V + + G SRGF F+ + PE
Sbjct: 351 YGNVTSCKVMMN-SQGLSRGFGFVAYSNPE 379
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 34.7 bits (76), Expect = 0.025
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +3
Query: 183 IFVGGLSSEISDDEIRNFFSEFG 251
+FVGGL + ++DD ++N FS++G
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYG 285
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 34.7 bits (76), Expect = 0.025
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +3
Query: 183 IFVGGLSSEISDDEIRNFFSEFG 251
+FVGGL + ++DD ++N FS++G
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYG 285
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 34.3 bits (75), Expect = 0.033
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 113
YG + S+ V D GRSRGF F+ F PE+ K M
Sbjct: 225 YGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAM 259
Score = 29.1 bits (62), Expect = 1.3
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Frame = +3
Query: 24 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-------GEHTINNKKVDPKKAKARHGK 182
++ K G+S+GF F+ F +S +A G+ K ++ + A G
Sbjct: 139 LSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGN 198
Query: 183 -----IFVGGLSSEISDDEIRNFFSEFGT 254
++V L ++DD + FS++GT
Sbjct: 199 QDSTNVYVKNLIETVTDDCLHTLFSQYGT 227
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVF 83
YG+I S V N GRS+GF F+ F
Sbjct: 327 YGQIVSAKVMCHEN-GRSKGFGFVCF 351
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 33.9 bits (74), Expect = 0.044
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESID-KVMAAGEHTINNKKVDPKKA 164
G++ S V P T +S GF F+ F + E ++ ++A + +K+ KA
Sbjct: 201 GKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
Score = 30.3 bits (65), Expect = 0.54
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 113
+G +E + V D +GRSR F F K+ E + V+
Sbjct: 99 HGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVV 134
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 33.9 bits (74), Expect = 0.044
Identities = 18/81 (22%), Positives = 36/81 (44%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIF 188
GE+ + + +P T +S+G AF+ F E + + + + N K A + +F
Sbjct: 238 GEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDNDTLF 297
Query: 189 VGGLSSEISDDEIRNFFSEFG 251
VG + + + +R +G
Sbjct: 298 VGNICKIWTPEALREKLKHYG 318
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 33.9 bits (74), Expect = 0.044
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 116
++G++ V TD ++GRS+GF F+ + E +K A
Sbjct: 56 SFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKA 93
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 33.9 bits (74), Expect = 0.044
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 116
G ++++ V TDP T +G AF+ F ES+ K +A
Sbjct: 469 GAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVA 504
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 33.9 bits (74), Expect = 0.044
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 119
++G + N+ D TG S+G+AF V++ P D AA
Sbjct: 397 SFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 33.5 bits (73), Expect = 0.058
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +3
Query: 168 ARHG-KIFVGGLSSEISDDEIRNFFSEFG 251
A+ G +IFVGGLS E++D ++ FS FG
Sbjct: 3 AKEGSRIFVGGLSPEVTDRDLERAFSRFG 31
Score = 33.1 bits (72), Expect = 0.077
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA------GEHTINNKKVDPK 158
+G+I + + +TGRSRGF FI F ++D+ + G+ I+ + +PK
Sbjct: 30 FGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPK 86
Score = 31.5 bits (68), Expect = 0.24
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 251 NFLEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPK 412
+ L+ ++ ++ + +GF FITF + +++ ++ R G + + V RA PK
Sbjct: 32 DILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPK 86
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.058
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 275 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 415
FDK + KG+ FI ++S + LK P++ IG + + A+ P
Sbjct: 173 FDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKGP 219
Score = 33.5 bits (73), Expect = 0.058
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 164
+GEIE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 268 FGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 31.5 bits (68), Expect = 0.24
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKA 89
YGEIE D +G+S+G+ FI++K+
Sbjct: 163 YGEIEDCKAVFDKISGKSKGYGFILYKS 190
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.058
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 275 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 415
FDK + KG+ FI ++S + LK P++ IG + + A+ P
Sbjct: 173 FDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKGP 219
Score = 33.5 bits (73), Expect = 0.058
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 164
+GEIE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 268 FGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 31.5 bits (68), Expect = 0.24
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKA 89
YGEIE D +G+S+G+ FI++K+
Sbjct: 163 YGEIEDCKAVFDKISGKSKGYGFILYKS 190
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.058
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 275 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 415
FDK + KG+ FI ++S + LK P++ IG + + A+ P
Sbjct: 173 FDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKGP 219
Score = 33.5 bits (73), Expect = 0.058
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 164
+GEIE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 268 FGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 31.5 bits (68), Expect = 0.24
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKA 89
YGEIE D +G+S+G+ FI++K+
Sbjct: 163 YGEIEDCKAVFDKISGKSKGYGFILYKS 190
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 33.5 bits (73), Expect = 0.058
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 45 NTGRSRGFAFIVFKAPESIDKVMA 116
NTGRSRGF FI F++ E++ +A
Sbjct: 255 NTGRSRGFGFISFESAENVQSALA 278
Score = 28.7 bits (61), Expect = 1.7
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIF 188
G + + + D T RSRGF F+ + E + M N+ ++ + K ++
Sbjct: 140 GTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAM----QMFNSSQIGGRTVKVNFPEVP 195
Query: 189 VGGLSSEISDDEIRN 233
GG +E+ +IR+
Sbjct: 196 RGG-ENEVMRTKIRD 209
Score = 27.5 bits (58), Expect = 3.8
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 257 LEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEVDV 394
++V++ +DK ++ +GF F+T S E+ + IGG+ V V
Sbjct: 143 VDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 33.1 bits (72), Expect = 0.077
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVF 83
A+G +E + + DP TG+ +GF FI F
Sbjct: 287 AFGPVELVQLPLDPETGQCKGFGFIQF 313
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 33.1 bits (72), Expect = 0.077
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 152
+G++ + D +GRSRGF F+ FK +K M +N K++D
Sbjct: 29 FGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKELD 73
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 278 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 391
D+ + +GF F+TF+ E+ + D ++ + GKE+D
Sbjct: 40 DRESGRSRGFGFVTFKDEKAMRDAIE----EMNGKELD 73
Score = 27.9 bits (59), Expect = 2.9
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
+ FVGGL+ +D++++ FS+FG
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFG 30
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 33.1 bits (72), Expect = 0.077
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 152
+G++ + D +GRSRGF F+ FK +K M +N K++D
Sbjct: 29 FGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKELD 73
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 278 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 391
D+ + +GF F+TF+ E+ + D ++ + GKE+D
Sbjct: 40 DRESGRSRGFGFVTFKDEKAMRDAIE----EMNGKELD 73
Score = 27.9 bits (59), Expect = 2.9
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
+ FVGGL+ +D++++ FS+FG
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFG 30
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 33.1 bits (72), Expect = 0.077
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 152
+G++ + D +GRSRGF F+ FK +K M +N K++D
Sbjct: 29 FGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKELD 73
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 278 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 391
D+ + +GF F+TF+ E+ + D ++ + GKE+D
Sbjct: 40 DRESGRSRGFGFVTFKDEKAMRDAIE----EMNGKELD 73
Score = 27.9 bits (59), Expect = 2.9
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
+ FVGGL+ +D++++ FS+FG
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFG 30
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 33.1 bits (72), Expect = 0.077
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESI 101
+GE+ + D TGRS+GF F+ FK +S+
Sbjct: 67 FGEVFDSKIIIDRETGRSKGFRFVTFKDEDSM 98
Score = 27.5 bits (58), Expect = 3.8
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 278 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT 406
D+ + KGF F+TF+ E D ++T + G+E+D + T
Sbjct: 78 DRETGRSKGFRFVTFKDE----DSMRTAIDRMNGQELDGRNIT 116
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 33.1 bits (72), Expect = 0.077
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKARHG 179
YG+I + +TGR RGF FI F D + + NK + KA+ + G
Sbjct: 35 YGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVG 93
Score = 31.1 bits (67), Expect = 0.31
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLK-TPKRTIGGKEVDVKRATPK 412
E ++ + + +GF FITF + +D +K R +G K + V +A PK
Sbjct: 40 ECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91
Score = 27.1 bits (57), Expect = 5.1
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
+IFVGGLS ++++ ++ + F +G
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYG 36
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 33.1 bits (72), Expect = 0.077
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKARHG 179
YG+I + +TGR RGF FI F D + + NK + KA+ + G
Sbjct: 35 YGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVG 93
Score = 31.1 bits (67), Expect = 0.31
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLK-TPKRTIGGKEVDVKRATPK 412
E ++ + + +GF FITF + +D +K R +G K + V +A PK
Sbjct: 40 ECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91
Score = 27.1 bits (57), Expect = 5.1
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
+IFVGGLS ++++ ++ + F +G
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYG 36
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 33.1 bits (72), Expect = 0.077
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +3
Query: 117 AGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTS*KWRCPLTK 284
AG H N D ++ + IFVGGL ++++++++ FS+FG + P+ K
Sbjct: 310 AGGHGGNGSMSD---GESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGK 362
Score = 29.5 bits (63), Expect = 0.95
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVF 83
Y ++ V D NTGRS+G+ F+ F
Sbjct: 237 YPSVKGAKVVIDSNTGRSKGYGFVRF 262
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 32.3 bits (70), Expect = 0.14
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 150 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 251
+P++ + GKIFVG L + I E FF +FG
Sbjct: 156 NPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFG 189
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 32.3 bits (70), Expect = 0.14
Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA---------GEHTINNKKVDPK 158
+G + + + D TG+ +G F+ + + D+ + A G + + D +
Sbjct: 143 HGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGE 202
Query: 159 KAK--ARHGKIFVGGLSSEISDDEIRNFFSEFG 251
+ + K+FVG L+ + ++ E+ F +FG
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG 235
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 32.3 bits (70), Expect = 0.14
Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA---------GEHTINNKKVDPK 158
+G + + + D TG+ +G F+ + + D+ + A G + + D +
Sbjct: 143 HGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGE 202
Query: 159 KAK--ARHGKIFVGGLSSEISDDEIRNFFSEFG 251
+ + K+FVG L+ + ++ E+ F +FG
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG 235
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 32.3 bits (70), Expect = 0.14
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFI 77
GE+ ++V TD TG SRGFA+I
Sbjct: 507 GEVTRVHVPTDRETGASRGFAYI 529
Score = 29.9 bits (64), Expect = 0.72
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +3
Query: 84 KAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 251
K ++ V A + K + + +F G LS +I+ +I NFF E G
Sbjct: 353 KKDSDVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAG 408
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 32.3 bits (70), Expect = 0.14
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVF 83
++GE+ + + D +GRSRGF F+ F
Sbjct: 63 SFGEVAEVRIAYDKGSGRSRGFGFVDF 89
Score = 29.5 bits (63), Expect = 0.95
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
K+F+GGLS + + +++ FS FG
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFG 65
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 32.3 bits (70), Expect = 0.14
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 21/101 (20%)
Frame = +3
Query: 15 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV-----DPKKAKARHG 179
+ +N+ + T RG F+ E DKV+ ++ +NKK P + K G
Sbjct: 38 VNEVNIIKEKTTRAPRGCCFLTCPTREDADKVI----NSFHNKKTLPGASSPLQVKYADG 93
Query: 180 ----------------KIFVGGLSSEISDDEIRNFFSEFGT 254
K+FVG L +S+ E+++ FSE+GT
Sbjct: 94 ELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSEYGT 134
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 31.9 bits (69), Expect = 0.18
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +3
Query: 3 AYGEIESI-NVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTINNK 143
A+G I S + DP+TG SRGF FI + + E+ D + + G++ N +
Sbjct: 134 AFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQ 183
Score = 30.7 bits (66), Expect = 0.41
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESID---KVMAA----GEHTINNKKVDPKKAK 167
G + ++ V D T + + FI +++ E D KV+ G+ NK KK+
Sbjct: 49 GPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSL 108
Query: 168 ARHGKIFVGGLSSEISDDEIRNFFSEFG 251
+F+G L ++ + + + FS FG
Sbjct: 109 DVGANLFIGNLDPDVDEKLLYDTFSAFG 136
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 31.9 bits (69), Expect = 0.18
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 152
+GEI V TD +GRS+G+ F+ F+ E+ I+ ++ +
Sbjct: 36 FGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRAN 84
Score = 27.1 bits (57), Expect = 5.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
K+FVGGL+ E + ++ F +FG
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFG 37
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 31.9 bits (69), Expect = 0.18
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 152
+GEI V TD +GRS+G+ F+ F+ E+ I+ ++ +
Sbjct: 36 FGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRAN 84
Score = 27.1 bits (57), Expect = 5.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
K+FVGGL+ E + ++ F +FG
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFG 37
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 31.9 bits (69), Expect = 0.18
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 152
+GEI V TD +GRS+G+ F+ F+ E+ I+ ++ +
Sbjct: 36 FGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRAN 84
Score = 27.1 bits (57), Expect = 5.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
K+FVGGL+ E + ++ F +FG
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFG 37
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 31.9 bits (69), Expect = 0.18
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 25/108 (23%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFK-------APESIDKVMAAGEH------------ 128
+G + S+ V +P TG SRG ++ A S+D G
Sbjct: 131 FGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPG 190
Query: 129 TINNKKV---DPKKA---KARHGKIFVGGLSSEISDDEIRNFFSEFGT 254
T N +V PKK +++H K++VG L D +RN FS+FGT
Sbjct: 191 TRRNPEVLNSTPKKILMYESQH-KVYVGNLPWFTQPDGLRNHFSKFGT 237
Score = 30.7 bits (66), Expect = 0.41
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 116
+G I S V D TGR+R FAF+ F + E D ++
Sbjct: 235 FGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS 271
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 31.5 bits (68), Expect = 0.24
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 119
+G++ V +D TGRSRGF F+ ++ +AA
Sbjct: 230 HGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Score = 30.7 bits (66), Expect = 0.41
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 14/95 (14%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKARHG-- 179
G +E V + +T +SRGF F+ E +K V +N +++ +A R
Sbjct: 137 GTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRP 196
Query: 180 -----------KIFVGGLSSEISDDEIRNFFSEFG 251
+I+VG L ++ + FSE G
Sbjct: 197 ERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHG 231
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 31.5 bits (68), Expect = 0.24
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 116
+G + S V DPN G S+G F+ F PE + M+
Sbjct: 155 FGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMS 190
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +3
Query: 102 DKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 251
DK + G + ++ D K + ++V L+ +DD+++N F E+G
Sbjct: 5 DKQVYVGPF-LRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYG 53
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 165 KARHGKIFVGGLSSEISDDEIRNFFSEFGT 254
K + ++V L ISD++++ FS FGT
Sbjct: 128 KFQSSNLYVKNLDPSISDEKLKEIFSPFGT 157
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 31.5 bits (68), Expect = 0.24
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 128
+G + + V + N+G SRGFAFI F ++ +M EH
Sbjct: 321 WGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEH 361
Score = 30.3 bits (65), Expect = 0.54
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI---NNKKVDPKKAKARH 176
+ I+ + + D T SRGFAF+ F + E K + A T N K + AK+ H
Sbjct: 481 HAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAYAKSVH 540
Query: 177 G 179
G
Sbjct: 541 G 541
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 31.1 bits (67), Expect = 0.31
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +3
Query: 15 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAK 167
IE++ V DP+ +G A+++FK E+ + V+ G + +++ + K
Sbjct: 313 IEAVRVIRDPHLNIGKGIAYVLFKTREAANLVLKKGYLKLRERELRISRVK 363
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 31.1 bits (67), Expect = 0.31
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 119
+G++ V D TGRSRGF F+ + +++ ++A
Sbjct: 267 HGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Score = 27.9 bits (59), Expect = 2.9
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 14/95 (14%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKA-PESIDKVMAAGEHTINNKKVDPKKAKARHG-- 179
G +E V + T +SRGF F+ + E+ V + +N + + KA R
Sbjct: 174 GTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRP 233
Query: 180 -----------KIFVGGLSSEISDDEIRNFFSEFG 251
+++VG L ++ + + FSE G
Sbjct: 234 ERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHG 268
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 31.1 bits (67), Expect = 0.31
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 182
G ++SI + +TG+ RG A+ F E + +A KK+ ++ + GK
Sbjct: 675 GGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKKGK 732
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 31.1 bits (67), Expect = 0.31
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 182
G ++SI + +TG+ RG A+ F E + +A KK+ ++ + GK
Sbjct: 675 GGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKKGK 732
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 31.1 bits (67), Expect = 0.31
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 149
G++ +++ DP T SRGF FI K+ ++ + + +H++ +V
Sbjct: 69 GKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRV 115
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 30.7 bits (66), Expect = 0.41
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG--------EHTINNKKVDPKK 161
+G ++ + V + TG+S+ F FI F+ PE + +AAG EH + ++P+
Sbjct: 83 FGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAE--IAAGAMNDYLLMEHMLKVHVIEPEN 140
Query: 162 AK 167
K
Sbjct: 141 VK 142
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 183 IFVGGLSSEISDDEIRNFFSEFGTS*KWRCPLTKQRTKER 302
+++G + + EI FFS+FGT + R K+ K +
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSK 101
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 30.7 bits (66), Expect = 0.41
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFK 86
+G++ + D +GRSRGF F+ FK
Sbjct: 29 FGDVIDSKIINDRESGRSRGFGFVTFK 55
Score = 27.9 bits (59), Expect = 2.9
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
+ FVGGL+ +D++++ FS+FG
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFG 30
Score = 27.5 bits (58), Expect = 3.8
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 278 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGG 379
D+ + +GF F+TF+ E+ + D ++ + GG
Sbjct: 40 DRESGRSRGFGFVTFKDEKAMRDAIEEMNGSGGG 73
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 30.7 bits (66), Expect = 0.41
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESID 104
G +E + V D TGRSRGF F+ ++
Sbjct: 123 GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 30.3 bits (65), Expect = 0.54
Identities = 13/56 (23%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 173
G++ V D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 273 GKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 328
Score = 30.3 bits (65), Expect = 0.54
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 257 LEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKP 415
+E + +D+ + KGF F+T S Q V + + + G+++ V A +P
Sbjct: 276 VEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARP 329
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 30.7 bits (66), Expect = 0.41
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESID 104
G +E + V D TGRSRGF F+ ++
Sbjct: 123 GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 30.3 bits (65), Expect = 0.54
Identities = 13/56 (23%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 173
G++ V D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 281 GKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336
Score = 30.3 bits (65), Expect = 0.54
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 257 LEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKP 415
+E + +D+ + KGF F+T S Q V + + + G+++ V A +P
Sbjct: 284 VEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARP 337
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 30.3 bits (65), Expect = 0.54
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVF 83
+G++ V D TGRSRGF F+ F
Sbjct: 58 FGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
K+F+GGLS D +R+ F+ FG
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFG 59
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 30.3 bits (65), Expect = 0.54
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVF 83
+G++ V D TGRSRGF F+ F
Sbjct: 58 FGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
K+F+GGLS D +R+ F+ FG
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFG 59
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 30.3 bits (65), Expect = 0.54
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFGTS*KWRCPL 278
K++VGG+ + ++DEIR++F G K C +
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKM 194
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 29.9 bits (64), Expect = 0.72
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 152
YG+I + +D T RS+G+ F+ FK ++ + IN ++ +
Sbjct: 40 YGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRAN 88
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 29.9 bits (64), Expect = 0.72
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 113
YG++ ++V D R +GFA++ F + E +K +
Sbjct: 44 YGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Score = 29.9 bits (64), Expect = 0.72
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 257 LEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEV 388
L+V++ DK + + KGF ++TF S E+ LL+ + + G+ V
Sbjct: 48 LKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVV 92
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 29.9 bits (64), Expect = 0.72
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 134
++GEI + V TG S G+A+I K E +K + G H +
Sbjct: 260 SFGEITRVFVPPSHGTGGSLGYAYIDLK--EGAEKALELGRHDV 301
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 29.9 bits (64), Expect = 0.72
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Frame = +3
Query: 18 ESINVKTDPNTGRSRGFAFIVFKAPE-------SIDKVMAAGEHTINNKKVDPKKAK--- 167
E + V + +TG+SRGFAF+ E ++D G N PK K
Sbjct: 112 ELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPL 171
Query: 168 --ARHGKIFVGGLSSEISDDEIRNFFSEFG 251
K+FVG LS ++ + + F E G
Sbjct: 172 YPETEHKLFVGNLSWTVTSESLAGAFRECG 201
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 113
G++ V D +TGRSRG+ F+ + + ++ +
Sbjct: 201 GDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETAL 235
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 29.9 bits (64), Expect = 0.72
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 119
+GEI+++N+ D +G +G+A I ++ E ++A
Sbjct: 118 FGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISA 155
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 29.9 bits (64), Expect = 0.72
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVF 83
GEI++++V D +TG S+G A++ F
Sbjct: 429 GEIKNVSVPIDRDTGNSKGIAYLEF 453
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFGTS 257
KIFV G + +S+D+I+N E +S
Sbjct: 402 KIFVKGFDASLSEDDIKNTLREHFSS 427
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 29.5 bits (63), Expect = 0.95
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 119
++ + V T+ TGRSRG+ F+ F + +S + ++A
Sbjct: 53 SFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 29.5 bits (63), Expect = 0.95
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 24/106 (22%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTIN---------NKK-- 146
Y ++ V D TGRS+G+ F+ F + M G++ + NKK
Sbjct: 197 YSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPL 256
Query: 147 -VDPKKAKARHGK----------IFVGGLSSEISDDEIRNFFSEFG 251
+ P + G IFVG + +++D++++ F +FG
Sbjct: 257 TMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFG 302
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 29.5 bits (63), Expect = 0.95
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 116
+GE+ + TDP TG+ G A+I F E+ + ++
Sbjct: 539 FGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS 575
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 29.5 bits (63), Expect = 0.95
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
KIFVG L+ + D++R +F +FG
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFG 36
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 29.5 bits (63), Expect = 0.95
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +3
Query: 63 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFS 242
G I + I V+ + + ++ P + K++V GLS ++D +R+ F
Sbjct: 39 GTGVISARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFE 98
Query: 243 EFG 251
+FG
Sbjct: 99 QFG 101
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 29.5 bits (63), Expect = 0.95
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +2
Query: 278 DKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKE--VDVKRAT 406
D T + KGF F FES E ++ + +RTI G+E V+V +AT
Sbjct: 237 DPTTKKPKGFGFYEFESAEGILRAIRLLTQRTIDGQELLVNVNQAT 282
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESI 101
G ++S DP T + +GF F F++ E I
Sbjct: 227 GHVKSCLRAEDPTTKKPKGFGFYEFESAEGI 257
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 29.5 bits (63), Expect = 0.95
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVFK 86
A+ V D TGRSRGF F+ F+
Sbjct: 170 AFNSCSDARVMWDQKTGRSRGFGFVSFR 197
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 29.5 bits (63), Expect = 0.95
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 152
++G+I V D +G SRGF F+ + + E + M A + NK++D
Sbjct: 58 SFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA----MQNKELD 103
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPK 158
YG + V D T RSRGF F+ + + + ++ + +N ++V K
Sbjct: 26 YGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVK 77
Score = 26.6 bits (56), Expect = 6.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
+++VG LS +DD +R FS +G
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYG 27
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 113
+G + + V D TG SRGF F+ F + E + +
Sbjct: 236 FGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAI 271
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 120 GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 251
GE NN + + + + VG +SS + D E++ F +FG
Sbjct: 198 GERGGNNSVGELNRGEIPSRTLLVGNISSNVEDYELKVLFEQFG 241
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 28.7 bits (61), Expect = 1.7
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 275 FDKTKNQRKGFC--FITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 415
F +T+ G C F+ FE V + +K +GG++V ++ P P
Sbjct: 289 FLRTRKDVMGVCYAFVEFEDMTSVENAIKASPIYLGGRQVYIEERRPNP 337
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 28.7 bits (61), Expect = 1.7
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 275 FDKTKNQRKGFC--FITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 415
F +T+ G C F+ FE V + +K +GG++V ++ P P
Sbjct: 348 FLRTRKDVMGVCYAFVEFEDMTSVENAIKASPIYLGGRQVYIEERRPNP 396
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINN 140
+G++ + V D +T +SRG AF+++ + E K + + I N
Sbjct: 80 FGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDAKILN 124
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 28.3 bits (60), Expect = 2.2
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 278 DKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRA 403
D+ + KGF FITFESE LK + + G+ + V+ A
Sbjct: 100 DQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETA 142
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 28.3 bits (60), Expect = 2.2
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 173
G++ + D + RS+GF F+ F + + K +M +N + + AKA+
Sbjct: 58 GQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAK 113
Score = 28.3 bits (60), Expect = 2.2
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 257 LEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEVDVKRATPK 412
+E ++ D+ ++ KGF F+TF S ++ L++ + + G+ + V A K
Sbjct: 61 VEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAK 113
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVFKAPE 95
A+GEI + + D RS+G+AFI F + +
Sbjct: 62 AFGEIAEVKLIKDEAMKRSKGYAFIQFTSQD 92
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 28.3 bits (60), Expect = 2.2
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAA 119
+GE+ES+++ T R G AF+ FK A S+ + AA
Sbjct: 584 FGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAA 622
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 173
G + + T+ + RGFAF+ F E +++ + T+ +++ K+A R
Sbjct: 44 GPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAHR 99
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFK 86
Y V D TGRSRGF F+ F+
Sbjct: 162 YPTCSDARVMWDQKTGRSRGFGFVSFR 188
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 116
+GE+ V TD +G S+GF F+ + E K +A
Sbjct: 79 FGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 119
++G ++ ++ D TG S+G+AF V++ D AA
Sbjct: 381 SFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 119
++G ++ ++ D TG S+G+AF V++ D AA
Sbjct: 381 SFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 119
++G ++ ++ D TG S+G+AF V++ D AA
Sbjct: 381 SFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 27.9 bits (59), Expect = 2.9
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 3 AYGEIESINVKTDPNTGRSRGFAFIVF 83
+YG I+ +++ TD T + +G+AFI +
Sbjct: 160 SYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 113
+G+I+ + D T R +GF FI F + + K +
Sbjct: 30 FGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Score = 27.1 bits (57), Expect = 5.1
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 260 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 391
E + D + KGF FITF+SE LK ++ GK VD
Sbjct: 35 EARLIRDSETQRPKGFGFITFDSEDDARKALK----SLDGKIVD 74
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFK 86
+ V D TGRSRGF F+ F+
Sbjct: 167 FSSCSDARVMWDQKTGRSRGFGFVSFR 193
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 27.9 bits (59), Expect = 2.9
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +3
Query: 186 FVGGLSSEISDDEIRNFFSEFG 251
+VG L S+ +++++N FS+FG
Sbjct: 11 YVGNLESDTEENDLKNAFSQFG 32
>At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 130
Score = 27.5 bits (58), Expect = 3.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 183 IFVGGLSSEISDDEIRNFFSEFG 251
+FV G S +S+ ++ FSEFG
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFG 82
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 27.5 bits (58), Expect = 3.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 183 IFVGGLSSEISDDEIRNFFSEFG 251
+FV G S +S+ ++ FSEFG
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFG 82
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 27.5 bits (58), Expect = 3.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 183 IFVGGLSSEISDDEIRNFFSEFG 251
+FV G S +S+ ++ FSEFG
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFG 101
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 113
+G + +V D T SRGF F+ F + E + +
Sbjct: 197 FGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAI 232
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 51 GRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 149
G SRGFAFI F++ +S + M + + +K+
Sbjct: 54 GESRGFAFIEFESADSAGRAMLHMDGRLIGQKI 86
Score = 26.6 bits (56), Expect = 6.7
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 287 KNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEVDVKRATPK 412
+ + +GF FI FES + +L R IG K + V+R TPK
Sbjct: 53 RGESRGFAFIEFESADSAGRAMLHMDGRLIGQKILCVQR-TPK 94
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVM 113
+G + + D +TG+SR F F+ F+ +S+ D +M
Sbjct: 30 FGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIM 66
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 27.5 bits (58), Expect = 3.8
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFGT 254
+++VG L +S+D++R F FG+
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGS 310
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 30 VKTDPNTGRSRGFAFIVFK 86
V D TGRSRGF F+ F+
Sbjct: 183 VMWDQKTGRSRGFGFVSFR 201
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 150 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 251
DP + G +FV L I + ++ + FS FG
Sbjct: 22 DPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFG 55
>At5g49760.1 68418.m06163 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 953
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
Frame = -2
Query: 154 GSTFLLLM----VCSPAAMTLSIDSGALNTMKA 68
G++ LL++ +CS +A+T +D+ ALN +K+
Sbjct: 6 GASLLLILFFFQICSVSALTNGLDASALNALKS 38
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 54 RSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAKARHGKI 185
+ R F F+ F PE++ ++A G H + + +V K K + GK+
Sbjct: 191 QKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKPYKEK-GKV 234
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 27.1 bits (57), Expect = 5.1
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 134
YG I+++ + TG SRG+ F+ ++ + + + H++
Sbjct: 87 YGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSL 129
>At5g18280.1 68418.m02149 apyrase (APY2) identical to apyrase
GI:6006801, GI:7672685 from [Arabidopsis thaliana]
Length = 472
Score = 26.6 bits (56), Expect = 6.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 191 DKNLPMSCFSLLWVYFLVVDG 129
++NLP C L++ Y L++DG
Sbjct: 414 EENLPYLCMDLVYQYTLLIDG 434
>At5g09970.1 68418.m01152 cytochrome P450 family protein
Length = 536
Score = 26.6 bits (56), Expect = 6.7
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -2
Query: 64 PRDLPVFGSVFTL 26
PR +PVFGS+FTL
Sbjct: 73 PRGIPVFGSLFTL 85
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 26.6 bits (56), Expect = 6.7
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 54 RSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAKARHGKI 185
+ R F F+ F PE++ ++A G H + + +V K K + GK+
Sbjct: 294 QKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVLVKPYKEK-GKV 337
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 26.6 bits (56), Expect = 6.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 183 IFVGGLSSEISDDEIRNFFSEFG 251
++VGG+ +S D++ FS+FG
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFG 274
>At1g12290.1 68414.m01421 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 884
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = -2
Query: 391 IDLLSTNCS-FGSLKQIIYNLLRFKCDETEALSLVLCFV 278
+D+ +T + FG++K+ I +L++ D E+ S+ CF+
Sbjct: 374 VDVSTTYAANFGAVKERILPILKYSYDNLESESVKTCFL 412
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 9 GEIESINVKTDPNTGRSRGFAFIVFKAPESID 104
GEI+ I + D NT GF F++F + E +
Sbjct: 58 GEIKKIIMGLDKNTKTPCGFCFVLFYSREDTE 89
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 26.2 bits (55), Expect = 8.9
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 54 RSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAKARHGKI 185
+ R F F+ F PE++ V+A G H I + +V K K + GK+
Sbjct: 295 QKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEK-GKV 338
>At5g04770.1 68418.m00492 amino acid permease family protein similar
to cationic amino acid transporter-1 [Rattus norvegicus]
GI:1589917; contains Pfam profile PF00324: Amino acid
permease
Length = 583
Score = 26.2 bits (55), Expect = 8.9
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 206 TAESSDKNLPMSCFSLLWVYFLVVDG 129
T ESS N+ M+ F + +++F++V G
Sbjct: 209 TRESSKVNMIMTAFHIAFIFFVIVMG 234
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 26.2 bits (55), Expect = 8.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 6 YGEIESINVKTDPNTGRSRGFAFIVF 83
+G + + + D +G+ RGFAF+ F
Sbjct: 70 FGPVRDVYIPRDYYSGQPRGFAFVEF 95
>At3g04080.1 68416.m00432 apyrase (APY1) identical to apyrase
(Atapy1) GI:6002631 from [Arabidopsis thaliana]
Length = 471
Score = 26.2 bits (55), Expect = 8.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 191 DKNLPMSCFSLLWVYFLVVDG 129
+ NLP C L++ Y L+VDG
Sbjct: 413 EDNLPYLCLDLVYQYTLLVDG 433
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 180 KIFVGGLSSEISDDEIRNFFSEFG 251
KIF+GG S IS + + S FG
Sbjct: 41 KIFIGGFSKAISSEMLMEIVSVFG 64
>At1g62170.1 68414.m07013 serpin family protein / serine protease
inhibitor family protein similar to phloem serpin-1
GI:9937311 from [Cucurbita maxima]; contains Pfam
profile PF00079: Serpin (serine protease inhibitor)
Length = 433
Score = 26.2 bits (55), Expect = 8.9
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 138 NKKVDPKKAKARHGKIFVGGLS-SEISDDEIRNFFSEFGTS*KWRCPLTKQRTKERASVS 314
+KK PK A +G LS + +S D +NFFS +R + RT+ A S
Sbjct: 150 SKKGGPKIAVV-NGMWMDQSLSVNPLSKDLFKNFFSAAFAQVDFRSKAEEVRTEVNAWAS 208
Query: 315 SHLN 326
SH N
Sbjct: 209 SHTN 212
>At1g15890.1 68414.m01906 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 851
Score = 26.2 bits (55), Expect = 8.9
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = -2
Query: 409 WCCTLHIDLLSTNCSFGSLKQIIYNLLRFKCDETEALSLVLCFV 278
W +H+ L S++ F S+++ I +L+F D+ + + LCF+
Sbjct: 368 WQHVIHV-LNSSSHEFPSMEEKILPVLKFSYDDLKDEKVKLCFL 410
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,163,574
Number of Sequences: 28952
Number of extensions: 175974
Number of successful extensions: 971
Number of sequences better than 10.0: 167
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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