Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0143.Seq
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0327 + 2289472-2289978,2290016-2290444,2290688-2290750,229...    33   0.24 
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587...    29   4.0  
01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592     28   6.9  
10_08_0382 - 17408873-17409440,17410711-17410840,17410936-17411068     28   9.2  
09_03_0066 - 12026714-12027211,12027783-12028103                       28   9.2  

>07_01_0327 +
           2289472-2289978,2290016-2290444,2290688-2290750,
           2290845-2291126
          Length = 426

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +1

Query: 538 AMLEHESVNGVV-ESMKVVTADNSERVARFAFEFAKKNGRKK 660
           AML+  +V  V+ +  ++    N+E+V RFA E  K++GR+K
Sbjct: 361 AMLQQRNVEAVMFQGRRLAGETNAEKVERFARELIKEHGRRK 402


>08_02_1091 +
           24256025-24256190,24256806-24257978,24258066-24258733,
           24258994-24260065,24260241-24260563,24260647-24260835,
           24261400-24261506,24262103-24262163,24262617-24262634
          Length = 1258

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/75 (20%), Positives = 32/75 (42%)
 Frame = +2

Query: 335 TIKRNGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYPGVATRHKDIDVVLS 514
           ++  +   L GN+ T  + +     ++    + +      NC  YPG   ++  +D  + 
Sbjct: 632 SLSSSSSSLSGNVATVPQDSLPNCSDILSDGDGEYTRKTNNCSVYPGADVKYVAVDDQIL 691

Query: 515 DRTQKVNTLCWNTNP 559
           + T  V++ C   NP
Sbjct: 692 NHTDYVSSGCEVLNP 706


>01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592
          Length = 853

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/59 (28%), Positives = 33/59 (55%)
 Frame = +3

Query: 498 LMLFYQTEHRR*IRYVGTRIREWCGRVNESGDS*QLREGGQVRLRIRQEKRQEEGDDGS 674
           +M+ + ++H +  + +  +I + C R+ ES      R GG+ R   R+ +R+E  +DGS
Sbjct: 701 MMVSFLSKHVKRYQSLEDKIDDLCTRMEESK-----RGGGRERHHRRRRQRRESEEDGS 754


>10_08_0382 - 17408873-17409440,17410711-17410840,17410936-17411068
          Length = 276

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 234 RIPCTQDRYRLQGAWSPRDDRRI 166
           R PC +     +GAWSP +D R+
Sbjct: 3   RAPCCEKEGLRRGAWSPEEDDRL 25


>09_03_0066 - 12026714-12027211,12027783-12028103
          Length = 272

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 278 VVDIDPTMDNDDDVQYAITT--IKRNGVGLKGNIETKSEAAYVTS 406
           + + D  +D DD+VQYAIT   +  +  G  G + + SE  Y  S
Sbjct: 76  ITEEDGNVD-DDEVQYAITNEGVGADDDGSDGKLSSASEVLYAAS 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,321,795
Number of Sequences: 37544
Number of extensions: 506914
Number of successful extensions: 1501
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1501
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)